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相关概念视频

Protein-protein Interfaces02:04

Protein-protein Interfaces

12.4K
Many proteins form complexes to carry out their functions, making protein-protein interactions (PPIs) essential for an organism's survival. Most PPIs are stabilized by numerous weak noncovalent chemical forces. The physical shape of the interfaces determines the way two proteins interact. Many globular proteins have closely-matching shapes on their surfaces, which form a large number of weak bonds. Additionally, many PPIs occur between two helices or between a surface cleft and a...
12.4K
Protein Networks02:26

Protein Networks

3.9K
An organism can have thousands of different proteins, and these proteins must cooperate to ensure the health of an organism. Proteins bind to other proteins and form complexes to carry out their functions. Many proteins interact with multiple other proteins creating a complex network of protein interactions.
These interactions can be represented through maps depicting protein-protein interaction networks, represented as nodes and edges. Nodes are circles that are representative of a protein,...
3.9K
Protein-Protein Interfaces02:04

Protein-Protein Interfaces

3.6K
3.6K
Protein Complexes with Interchangeable Parts01:57

Protein Complexes with Interchangeable Parts

1.8K
1.8K
Assembly of Signaling Complexes01:30

Assembly of Signaling Complexes

5.7K
Multiprotein signaling complexes are formed in a dynamic process involving protein-protein interactions at the cytoplasmic domain of transmembrane receptors or enzymatic and non-enzymatic proteins associated with the receptor. These complexes ensure the activation and propagation of intracellular signals that regulate cell functions.
Interaction domains in cell signaling
Interaction domains recognize exposed features of their binding partners containing post-translationally modified sequences,...
5.7K
Tagging and Fusion Proteins01:24

Tagging and Fusion Proteins

6.6K
Proteins are involved in several cellular processes and biochemical reactions. Analyzing a specific protein of interest requires it to be isolated from the other proteins in the cell. This is achieved by overexpressing the specific gene in a suitable host to produce large quantities of the target protein. A tag or label is recombined with the gene to produce a fusion protein containing the target protein and the tag. The tags on these fusion proteins can then be used for easy detection and...
6.6K

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相关实验视频

Updated: May 27, 2025

Genome-wide Protein-protein Interaction Screening by Protein-fragment Complementation Assay PCA in Living Cells
08:38

Genome-wide Protein-protein Interaction Screening by Protein-fragment Complementation Assay PCA in Living Cells

Published on: March 3, 2015

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蛋白质-蛋白质相互作用接口的多重映射.

Jingxuan He, Ling-Nan Zou, Vidhi Pareek

    bioRxiv : the preprint server for biology
    |February 20, 2025
    PubMed
    概括

    我们开发了SpARC-map,这是一种用于在体内识别蛋白质-蛋白质相互作用接口的新方法. 这种技术使用细菌亲和力选择和DNA测序来绘制相互作用的地图,有助于结构生物学和药物发现.

    科学领域:

    • 生物化学 生物化学
    • 分子生物学分子生物学
    • 结构生物学 结构生物学

    背景情况:

    • 识别蛋白与蛋白相互作用 (PPI) 接口对于理解细胞机制至关重要.
    • 现有的方法通常需要专门的设备或体外复杂的复合溶液,限制了它们的可访问性.

    研究的目的:

    • 推出Sparc-map,一种用于绘制PPI接口的新,可访问的体内方法.
    • 证明Sparc-map在识别已知和新型蛋白质相互作用部位方面的实用性.

    主要方法:

    • 在细菌宿主中,SpARC-map采用了体内亲和力选择.
    • 高通量DNA测序用于推断PPI接口的位置.
    • 该方法采用常规的微生物学技术,不需要专门的仪器.

    主要成果:

    • 在p21-PCNA复合体中,SpARC-map成功地确定了已知的接口.
    • 该方法揭示了纯酶体复合体内的新型接口,与基质道化一致.
    • 基于机器学习的蛋白质结构预测的Sparc-map结果提供了限制.

    结论:

    • "Sparc-map"是一种多功能和灵敏的方法,用于在一系列亲和关系中绘制PPI.

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    Quantification of Protein Interaction Network Dynamics using Multiplexed Co-Immunoprecipitation

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    相关实验视频

    Last Updated: May 27, 2025

    Genome-wide Protein-protein Interaction Screening by Protein-fragment Complementation Assay PCA in Living Cells
    08:38

    Genome-wide Protein-protein Interaction Screening by Protein-fragment Complementation Assay PCA in Living Cells

    Published on: March 3, 2015

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    Identifying Protein-protein Interaction Sites Using Peptide Arrays
    07:44

    Identifying Protein-protein Interaction Sites Using Peptide Arrays

    Published on: November 18, 2014

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    Quantification of Protein Interaction Network Dynamics using Multiplexed Co-Immunoprecipitation
    00:07

    Quantification of Protein Interaction Network Dynamics using Multiplexed Co-Immunoprecipitation

    Published on: August 21, 2019

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  • 该技术有助于研究复杂的生物系统,如纯酶体.
  • 斯帕克地图对结构生物学,药物发现和计算蛋白质建模有影响.