走向深度学习,用于蛋白质设计的序列结构协同生成
Chentong Wang1, Sarah Alamdari2, Carles Domingo-Enrich2
1School of Life Sciences, Westlake University, Hangzhou, Zhejiang, 310024, China.
Current opinion in structural biology
|February 21, 2025
概括
深度生成模型可以通过从自然序列和结构中学习来设计新型蛋白质. 新兴的联合生成方法,同时模拟蛋白质序列和结构,提供更准确和可控制的蛋白质设计可能性.
科学领域:
- 计算生物学是一种计算生物学.
- 蛋白质工程是一种蛋白质工程.
- 人工智能在药物发现中的作用
背景情况:
- 深度生成模型通过从自然蛋白质数据中学习来推进蛋白质设计.
- 当前的模型经常独立生成蛋白质序列或结构.
- 序列和结构的同时联合生成提供了增强的设计控制和准确性.
研究的目的:
- 审查最近在蛋白质设计的深度生成模型方面的进展.
- 专注于序列结构联合生成方法.
- 讨论这个领域的未来机会.
主要方法:
- 对蛋白质设计的深度生成模型的文献综述.
- 专注于用于同时序列和结构联合生成的方法.
- 对联合发电模型的评估原则的分析.
主要成果:
- 突出序列结构联合生成中的关键方法论和评估原则.
- 总结了该领域最近的突破.
- 确定当前的趋势和挑战.
结论:
- 序列结构协同生成在蛋白质设计中是一个有前途的前沿.
- 需要进一步开发才能充分发挥这些模型的潜力.
- 持续的研究可以加速创造具有所需功能的新型蛋白质.
相关概念视频
Protein and Protein Structure
77.9K
Proteins are one of the most abundant organic molecules in living systems and have the most diverse range of functions of all macromolecules. Proteins may be structural, regulatory, contractile, or protective. They may serve in transport, storage, or membranes; or they may be toxins or enzymes. Their structures, like their functions, vary greatly. They are all, however, amino acid polymers arranged in a linear sequence.
A protein's shape is critical to its function. For example, an enzyme...
A protein's shape is critical to its function. For example, an enzyme...
77.9K
Protein and Protein Structures
10.3K
10.3K
Protein Organization
6.2K
Proteins are polymers of amino acid residues. They are versatile and responsible for different cellular functions, including DNA replication, molecular transport, catalysis, and structural support. Proteins have a hierarchical structure comprising at least three levels of organization: primary, secondary, and tertiary structure. Some large proteins have a quaternary structure where individual protein subunits are linked together.
The primary structure of a protein is its amino acid sequence....
The primary structure of a protein is its amino acid sequence....
6.2K
Conservation of Protein Domains Over Different Proteins
10.7K
Protein domains are small structurally independent units that are part of a single amino acid chain. Although these domains are often structurally independent, they may rely on synergistic effects to perform their functions as part of a larger protein. Protein domains may be conserved within the same organism, as well as across different organisms.
A limited set of protein domains often duplicate and recombine during evolution. These domains can be organized in different combinations to...
A limited set of protein domains often duplicate and recombine during evolution. These domains can be organized in different combinations to...
10.7K
Structural Protein Function
2.7K
2.7K
From DNA to Protein
17.9K
The flow of genetic information in cells from DNA to mRNA to protein is described by the central dogma, which states that genes specify the sequence of mRNAs, which in turn specify the sequence of amino acids making up all proteins. The decoding of one molecule to another is performed by specific proteins and RNAs. Because the information stored in DNA is so central to cellular function, it makes intuitive sense that the cell would make mRNA copies of this information for protein synthesis...
17.9K


