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相关概念视频

Cryo-electron Microscopy01:28

Cryo-electron Microscopy

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Conventional electron microscopy (EM) involves dehydration, fixation, and staining of biological samples, which distorts the native state of biological molecules and results in several artifacts. Also, the high-energy electron beam damages the sample and makes it difficult to obtain high-resolution images. These issues can be addressed using cryo-EM, which uses frozen samples and gentler electron beams. The technique was developed by Jacques Dubochet, Joachim Frank, and Richard Henderson, for...
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Electron Microscope Tomography and Single-particle Reconstruction01:07

Electron Microscope Tomography and Single-particle Reconstruction

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Transmission electron microscopy (TEM) can be used to determine the 3D structure of biological samples with the help of techniques such as electron microscope tomography and single-particle reconstruction. While single-particle reconstruction can examine macromolecules and macromolecular complexes in vitro conditions only, tomography permits the study of cell components or small cells in vivo.
Electron Tomography
Electron tomography can be performed either in TEM or STEM (scanning transmission...
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Protein Dynamics in Living Cells01:19

Protein Dynamics in Living Cells

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Different fluorescence-based techniques are used to study the protein dynamics in living cells. These techniques include FRAP, FRET, and PET.
Fluorescent recovery after photobleaching (FRAP) is a fluorescent-protein-based detection technique used to quantify protein movement rates within the cell. This method exposes a small portion of the cell to an intense laser beam. The laser beam causes permanent photobleaching of the fluorophore-tagged proteins in the exposed region. As the bleached...
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相关实验视频

Updated: May 26, 2025

Correlative Microscopy for 3D Structural Analysis of Dynamic Interactions
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Correlative Microscopy for 3D Structural Analysis of Dynamic Interactions

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基于动态的药物发现通过时间解析的冷电磁共振.

Youdong Mao1

  • 1School of Physics, Peking-Tsinghua Joint Center for Life Sciences, Center for Quantitative Biology, National Biomedical Imaging Center, Peking University, Beijing 100871, China; School of Chemical Biology and Biotechnology, Peking University Shenzhen Graduate School, Shenzhen 518055, China.

Current opinion in structural biology
|February 22, 2025
PubMed
概括

时间分辨率冷电子显微镜 (cryo-EM) 可视化了基于结构的药物设计的生物分子动态. 将冷EM与人工智能集成为发现新疗法和克服耐药性提供了一种强大的方法.

科学领域:

  • 结构生物学 结构生物学
  • 生物物理学的生物物理.
  • 药物发现 药物发现 药物发现

背景情况:

  • 基于结构的药物设计 (SBDD) 依赖于高分辨率的结构模型.
  • 模拟分子动力学的局限性阻碍了SBDD的治疗转化.
  • 原子水平的功能动态对于理解药物相互作用至关重要.

研究的目的:

  • 突出时间分辨率冷电子显微镜 (cryo-EM) 在推进SBDD方面的潜力.
  • 探索冷EM与人工智能和机器学习 (ML) 的整合,以实现动态药物设计.
  • 为了证明冷EM如何克服传统分子动力学模拟的局限性.

主要方法:

  • 使用时间分辨率的冷电子显微镜 (cryo-EM) 来捕捉动态生物分子状态.
  • 将冷EM数据与机器学习 (ML) 和人工智能 (AI) 算法集成.
  • 应用冷EM可视化中间状态和蛋白质 - 连接体相互作用.

主要成果:

  • 时间解析的冷EM可视化了罕见的中间状态和动态相互作用.
  • 与AI/ML的集成使基于动态的SBDD能够实现具有挑战性的目标.
  • 化EM提供了对药物结合动力学和全调节的洞察.
关键词:
蛋白质动力学 蛋白质动力学发现药物的发现.机器学习是机器学习.时间解析的冷电磁震.

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Author Spotlight: Exploring Cellular Processes by Modeling Ligands in Cryo-EM Maps
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User-friendly, High-throughput, and Fully Automated Data Acquisition Software for Single-particle Cryo-electron Microscopy
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User-friendly, High-throughput, and Fully Automated Data Acquisition Software for Single-particle Cryo-electron Microscopy

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相关实验视频

Last Updated: May 26, 2025

Correlative Microscopy for 3D Structural Analysis of Dynamic Interactions
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Correlative Microscopy for 3D Structural Analysis of Dynamic Interactions

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Author Spotlight: Exploring Cellular Processes by Modeling Ligands in Cryo-EM Maps
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User-friendly, High-throughput, and Fully Automated Data Acquisition Software for Single-particle Cryo-electron Microscopy
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User-friendly, High-throughput, and Fully Automated Data Acquisition Software for Single-particle Cryo-electron Microscopy

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结论:

  • 时间解析的冷EM与人工智能相结合,通过启用基于动态的SBDD,彻底改变了药物发现.
  • 这种方法可以识别新的可用药物的形状,并克服耐药性.
  • 未来的发展有望在体内可视化药物作用,加速临床转化.