人体免疫球蛋白重链常数基因位点被丰富为大型复杂结构变异和编码多态,在人类种群中频率不同
Uddalok Jana1, Oscar L Rodriguez1, William Lees1,2
1Department of Biochemistry and Molecular Genetics, University of Louisville School of Medicine, Louisville, KY, USA.
bioRxiv : the preprint server for biology
|February 24, 2025
概括
研究人员绘制了免疫球蛋白重链常量 (IGHC) 位点,揭示了大量未经记录的遗传变异和人群特异性差异. 这为了解抗体功能和疾病提供了新的基础.
科学领域:
- 免疫遗传学 免疫遗传学
- 基因组学就是基因组学.
- 分子生物学分子生物学
背景情况:
- 免疫球蛋白重链常数 (IGHC) 域决定了对免疫至关重要的抗体效应因子功能.
- 现有的关于人类IGHC基因组多样性的知识是不完整的.
研究的目的:
- 为了全面描述人类IGHC位点的基因组多样性.
- 建立一个高质量的IGHC哈普洛型和变异目录.
- 研究特定种群的遗传变异及其进化影响.
主要方法:
- 利用了来自105个不同个体的长时间读取的基因组数据集.
- 开发了一种针对IGHC位置的高通量长读序列和组装方法.
- 进行局部分相,以识别单核酸变异 (SNVs) 和结构变异 (SVs).
主要成果:
- 发现了以前未经描述的SNV和7个复杂的SV.
- 确定了262个IGHC编码基因,其中235个 (89.6%) 是新的.
- 观察到对等基因频率的显著人群差异化,包括在亚洲人群中丰富的独特变异.
- 发现了自然选择作用于IGHC单元型的证据.
结论:
- 在IGHC位点内照明了哈普洛型多样性的缺失标志.
- 建立了IGHC生殖系变异的基础目录.
- 为未来研究IGHC在抗体功能和疾病易感性中的作用提供了基础.
相关概念视频
Human Genetics
520
Human genetics provides a profound framework for understanding the interplay between genetic predispositions and human psychology. At the heart of this discipline lies the study of how genes influence physical traits, behaviors, and susceptibility to diseases. Each person carries a unique genetic code that subtly or significantly shapes their psychological and behavioral landscape.
The complex relationship between genetics and psychology is observable through common biological components such...
The complex relationship between genetics and psychology is observable through common biological components such...
520
Comparing Copy Number Variations and SNPs
17.0K
Sequencing of the human genome has opened up several best-kept secrets of the genome. Scientists have identified thousands of genome variations that exist within a population. These variations can be a single nucleotide or a larger chromosomal variation.
Copy number variations or CNVs are the structural variations that cover more than 1kb of DNA sequence. The single nucleotide polymorphism (SNP), on the other hand, is a single nucleotide change or a point mutation that is found in more than 1%...
Copy number variations or CNVs are the structural variations that cover more than 1kb of DNA sequence. The single nucleotide polymorphism (SNP), on the other hand, is a single nucleotide change or a point mutation that is found in more than 1%...
17.0K
Pleiotropy
39.5K
Pleiotropy is the phenomenon in which a single gene impacts multiple, seemingly unrelated phenotypic traits. For example, defects in the SOX10 gene cause Waardenburg Syndrome Type 4, or WS4, which can cause defects in pigmentation, hearing impairments, and an absence of intestinal contractions necessary for elimination. This diversity of phenotypes results from the expression pattern of SOX10 in early embryonic and fetal development. SOX10 is found in neural crest cells that form melanocytes,...
39.5K
Single Nucleotide Polymorphisms-SNPs
13.9K
A single nucleotide polymorphism or SNP is a single nucleotide variation at a specific genomic position in a large population. It is the most prevalent type of sequence variation found in the human genome. Point mutations that occur in more than 1% of the population qualify as SNPs. These are present once every 1000 nucleotides on an average in the human genome. Replacement of a purine with another purine (A/G) or a pyrimidine with another pyrimidine (C/T) is known as a transition. In contrast,...
13.9K
Multi-species Conserved Sequences
3.9K
Next-generation sequencing technologies have created large genomic databases of a variety of animals and plants. Ever since the human genome project was completed, scientists studied the genome of primates, mammals, and other phylogenetically distant living beings. Such large-scale studies have provided new insights into the evolutionary relationship between organisms.
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved...
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved...
3.9K
Genome-wide Association Studies-GWAS
12.3K
Genome-wide association studies or GWAS are used to identify whether common SNPs are associated with certain diseases. Suppose specific SNPs are more frequently observed in individuals with a particular disease than those without the disease. In that case, those SNPs are said to be associated with the disease. Chi-square analysis is performed to check the probability of the allele likely to be associated with the disease.
GWAS does not require the identification of the target gene involved in...
GWAS does not require the identification of the target gene involved in...
12.3K


