一组RNA聚合酶II分子稳定地与一个活跃的基因相关联
Apratim Mukherjee1,2, Manya Kapoor2,3, Kareena Shankta2,4
1Department of Cell and Developmental Biology, Perelman School of Medicine, University of Pennsylvania; Philadelphia, PA 19104, USA.
bioRxiv : the preprint server for biology
|February 24, 2025
概括
RNA聚合酶II (RNAPII) 集群在基因激活过程中形成,并与活性基因结合. 这些星系团就是这些星系团.
科学领域:
- 分子生物学分子生物学
- 发展生物学 发展生物学
- 遗传学 遗传学 是一个
背景情况:
- 转录在真核核中涉及RNA聚合酶II (RNAPII) 分子形成离散的集群.
- 这些RNAPII集群与基因活性相关的精确功能和动态尚未完全理解.
研究的目的:
- 为了研究RNAPII集群在Drosophila melanogaster胚胎中Zygotic基因组激活 (ZGA) 期间的功能作用.
- 描述RNAPII集群动态和转录输出在发育背景中的关系.
主要方法:
- 使用单分子追踪和晶格光片显微镜.
- 在ZGA期间分析了RNAPII集群的形成,寿命和与基因位置的关联.
主要成果:
- RNAPII集群的形成取决于转录的启动.
- 集群寿命随着转录延长而减少.
- RNAPII集群稳定地与活跃的基因位点相关,它们的强度与转录输出相关.
- 预ZGA集群可能是原始基因,而后ZGA集群主要包括延长分子.
结论:
- 在早期发育过程中,RNAPII集群在调节基因转录方面发挥着至关重要的作用.
- 集群动态反映了基因激活和延长的不同阶段.
- 这些发现提供了关于ZGA.期间转录的空间组织的见解.
更多相关视频
相关概念视频
RNA Polymerase II Accessory Proteins
9.1K
Proteins that regulate transcription can do so either via direct contact with RNA Polymerase or through indirect interactions facilitated by adaptors, mediators, histone-modifying proteins, and nucleosome remodelers. Direct interactions to activate transcription is seen in bacteria as well as in some eukaryotic genes. In these cases, upstream activation sequences are adjacent to the promoters, and the activator proteins interact directly with the transcriptional machinery. For example, in...
9.1K
Transcription Initiation
16.1K
Initiation is the first step of transcription in eukaryotes. Prokaryotic RNA Polymerase (RNAP) can bind to the template DNA and start transcribing. On the other hand, transcription in eukaryotes requires additional proteins, called transcription factors, to first bind to the promoter region in the DNA template. This binding helps recruit the specific RNAP that can assemble on the DNA and start transcription.
The promoters and enhancers and their accessory proteins allow tight regulation of...
The promoters and enhancers and their accessory proteins allow tight regulation of...
16.1K
Eukaryotic RNA Polymerases
23.2K
RNA Polymerase (RNAP) is conserved in all animals, with bacterial, archaeal, and eukaryotic RNAPs sharing significant sequence, structural, and functional similarities. Among the three eukaryotic RNAPs, RNA Polymerase II is most similar to bacterial RNAP in terms of both structural organization and folding topologies of the enzyme subunits. However, these similarities are not reflected in their mechanism of action.
All three eukaryotic RNAPs require specific transcription factors, of which the...
All three eukaryotic RNAPs require specific transcription factors, of which the...
23.2K
General Transcription Factors
5.1K
Tissue-specific transcription factors contribute to diverse cellular functions in mammals. For example, the gene for beta globin, a major component of hemoglobin, is present in all cells of the body. However, it is only expressed in red blood cells because the transcription factors that can bind to the promoter sequences of the beta globin gene are only expressed in these cells. Tissue-specific transcription factors also ensure that mutations in these factors may impair only the function of...
5.1K
Bacterial RNA Polymerase
28.4K
Unlike eukaryotes, bacteria use a single RNA Polymerase (RNAP) to transcribe all genes. The different subunits of bacterial RNAPhave distinct functions. The multisubunit structure of the bacterial RNAP helps the enzyme to maintain catalytic function, facilitate assembly, interact with DNA and RNA, and self-regulate its activity.
In most genes, the transcription site is a single base present upstream of the coding sequence. Though RNAP is a catalytically efficient enzyme, it does not recognize...
In most genes, the transcription site is a single base present upstream of the coding sequence. Though RNAP is a catalytically efficient enzyme, it does not recognize...
28.4K
Cooperative Binding of Transcription Regulators
6.3K
Transcriptional regulators bind to specific cis-regulatory sequences in the DNA to regulate gene transcription. These cis-regulatory sequences are very short, usually less than ten nucleotide pairs in length. The short length means that there is a high probability of the exact same sequence randomly occurring throughout the genome. Since regulators can also bind to groups of similar sequences, this further increases the chances of random binding. Transcriptional regulators form...
6.3K


