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相关概念视频

2D NMR: Heteronuclear Single-Quantum Correlation Spectroscopy (HSQC)01:19

2D NMR: Heteronuclear Single-Quantum Correlation Spectroscopy (HSQC)

618
Heteronuclear single-quantum correlation spectroscopy (HSQC) is a 2D NMR technique that reveals one-bond correlations between hydrogen and a heteronucleus. The HSQC experiment is similar to the heteronuclear correlation experiment (HETCOR) but is more sensitive. In the HSQC spectrum, the proton chemical shift is plotted on the horizontal F2 axis, while the 13C chemical shift is plotted on the vertical F1 axis. The corresponding proton and 13C spectra are also shown. The HSQC contour plot does...
618
Compartment Models: Single-Compartment Model01:14

Compartment Models: Single-Compartment Model

2.1K
The single-compartment model serves as a simplified representation of the human body. This model assumes that the body functions as a single, well-mixed open compartment. When a drug is administered intravenously, it enters the body and quickly distributes uniformly. The drug then undergoes biotransformation and elimination, ultimately leaving the body. The volume of this compartment is referred to as the apparent volume of distribution into which the drug can uniformly distribute. In this...
2.1K
Compartment Models: Two-Compartment Model01:20

Compartment Models: Two-Compartment Model

5.1K
The two-compartment model divides the body into central and peripheral compartments to account for varying blood perfusion rates among organs and tissues, affecting drug distribution. The central compartment includes blood and highly perfused tissues with rapid drug distribution, while the peripheral compartment contains tissues with slower drug distribution. After a single IV bolus dose, the drug concentration is high in plasma and low in tissues. The drug distribution between compartments...
5.1K
Chemical Shift: Internal References and Solvent Effects01:17

Chemical Shift: Internal References and Solvent Effects

590
In an NMR sample, precise measurement of the absolute absorption frequencies of nuclei is difficult. A standard internal reference compound is added, and the frequency difference between the reference signal and sample signals is measured.
The internal reference compound generally used in NMR spectroscopy is tetramethylsilane (TMS). TMS is preferred because it is chemically inert, soluble in NMR solvents, and easily removable. Also, the highly shielded methyl protons in TMS yield an intense...
590
¹H NMR of Labile Protons: Temporal Resolution01:10

¹H NMR of Labile Protons: Temporal Resolution

1.1K
Protons bonded to heteroatoms such as nitrogen and oxygen exhibit a range of chemical shift values. This is due to the varying degree of hydrogen bonding between the proton and the heteroatom in other molecules. The extent of hydrogen bonding affects the electron density around the proton, thereby giving different chemical shift values for the protons in the proton NMR spectrum.
The –OH proton in alcohols typically appears in the range of δ 2 to 5 ppm but can vary depending on the specific...
1.1K
Inductive Effects on Chemical Shift: Overview01:27

Inductive Effects on Chemical Shift: Overview

1.1K
The protons in unsubstituted alkanes are strongly shielded with chemical shifts below 1.8 ppm. Methine, methylene, and methyl protons appear at approximately 1.7, 1.2 and 0.7 ppm, while the proton signal from methane appears at 0.23 ppm. An electronegative substituent, such as chlorine, withdraws the electron density from the protons, increasing their chemical shift. Progressive substitution of the hydrogens in methane by chlorine shifts the proton signals increasingly downfield, to 3.05 ppm in...
1.1K

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相关实验视频

Updated: May 26, 2025

Enhanced Sample Multiplexing of Tissues Using Combined Precursor Isotopic Labeling and Isobaric Tagging cPILOT
09:06

Enhanced Sample Multiplexing of Tissues Using Combined Precursor Isotopic Labeling and Isobaric Tagging cPILOT

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在MaxQuant中更新同位素标签.

Daniela Ferretti1, Pelagia Kyriakidou1, Jinqiu Xiao1

  • 1Computational Systems Biochemistry Research Group, Max Planck Institute of Biochemistry, Am Klopferspitz 18, Martinsried 82152, Germany.

Journal of proteome research
|February 25, 2025
PubMed
概括
此摘要是机器生成的。

现在MaxQuant软件通过杂质校正和加权中位数规范化改进了等离体标签分析. 这一更新提高了精度,并减少了复杂蛋白质组数据集中的批量效应,包括单细胞和酸化研究.

关键词:
他们很饥饿.这是MaxQuant.TMTT TMTT 是一个很好的方法.这就是UMAP UMAP.批量效应 批量效应 批量效应人体地图 - 人体地图同标签的标签是同的规范化的正常化.单细胞蛋白质组学 单细胞蛋白质组学这就是T-SNENE.权重中位数的正常化平均值

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Proteome-wide Quantification of Labeling Homogeneity at the Single Molecule Level
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相关实验视频

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Enhanced Sample Multiplexing of Tissues Using Combined Precursor Isotopic Labeling and Isobaric Tagging cPILOT
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Enhanced Sample Multiplexing of Tissues Using Combined Precursor Isotopic Labeling and Isobaric Tagging cPILOT

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Proteome-wide Quantification of Labeling Homogeneity at the Single Molecule Level
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科学领域:

  • 蛋白质组学和质谱学
  • 计算生物学和生物信息学

背景情况:

  • 对于定量蛋白质组学来说,像TMT Pro这样的同标签技术至关重要.
  • 精确分析复杂的蛋白质组数据需要强大的软件工具.
  • 挑战包括在大规模研究中报告离子杂质和批量效应.

研究的目的:

  • 介绍MaxQuant软件的最新版本,用于同位素标签数据分析.
  • 使用基准数据集评估新功能性能.
  • 提高定量蛋白质组学的准确性,减少定量蛋白质组学的系统错误.

主要方法:

  • 对等离子体标签的杂质校正因子的实施 (例如,TMT Pro).
  • 直接分析TMT数据与FAIMS分离相结合.
  • 将加权中位数规范化应用于各种数据集,包括人体地图数据.

主要成果:

  • 杂质校正显著提高了准确性,在单细胞多种混合物上证明了这一点.
  • 权重中位数的正常化有效地消除或减少批量效应,从而导致生物学上有意义的集群.
  • 规范化即使不使用参考通道也表现良好,简化了实验设计.

结论:

  • 更新后的MaxQuant软件提供了用于分析等标签数据的增强功能.
  • 新功能提高数据准确性,减少批量效应,简化分析工作流程.
  • 马克斯量子为定量蛋白质组学研究提供了一个强大的,免费可用的工具.