通过使用webKnossossos在电子显微镜体积中的线粒体的有效细胞范围映射
Yi Jiang1, Haoyu Wang1, Kevin M Boergens2
1Shanghai Institute of Precision Medicine, Ninth People's Hospital, Shanghai Jiao Tong University School of Medicine, 200125 Shanghai, China.
Cell reports methods
|February 25, 2025
概括
使用体积电子显微镜 (vEM) 的新方法Mito-SegEM有效地将细胞身份分配给线粒体,而无需细胞膜轮. 这促进了高通量细胞结构的量化.
科学领域:
- 细胞生物学 细胞生物学
- 神经科学是一个神经科学.
- 计算生物学 计算生物学
背景情况:
- 卷电子显微镜 (vEM) 和人工智能使高通量细胞结构量化成为可能.
- 将细胞身份分配给细分线粒体是一个计算挑战,通常需要细胞膜轮.
研究的目的:
- 介绍mito-SegEM,这是一个vEM重建程序,用于将细胞身份分配给细分的线粒体.
- 在线粒体实例细分中绕过细胞膜轮的需要.
主要方法:
- 使用基于虚拟路径的注释来分配线粒体实例.
- 使用webKnossos,一个开源平台,用于注释,可视化和校对.
- 将程序应用于来自大脑,肠道和丸组织的体积数据集.
主要成果:
- 成功地将细胞身份分配给各种组织中的众多线粒体实例.
- 证明了线粒体的准确和高效的重建.
- 验证了 mito-SegEM 程序的广泛应用.
结论:
- 米托-SegEM为细胞规模的线粒体重建提供了一个有效的解决方案.
- 该方法克服了器官实例细分中的计算挑战.
- 方便在各种生物背景下对线粒体网络进行先进的定量分析.
相关概念视频
Imaging Biological Samples with Optical Microscopy
Optical microscopy uses optic principles to provide detailed images of samples. Antonie van Leeuwenhoek designed the first compound optical microscope in the 17th century to visualize blood cells, bacteria, and yeast cells. In 1830, Joseph Jackson Lister created an essentially modern light microscope. The 20th century saw the development of microscopes with enhanced magnification and resolution.
In optical microscopy, the specimen to be viewed is placed on a glass slide and clipped on the stage...
In optical microscopy, the specimen to be viewed is placed on a glass slide and clipped on the stage...
Overview of Electron Microscopy
The wavelengths of visible light ultimately limit the maximum theoretical resolution of images created by light microscopes. Most light microscopes can only magnify 1000X, and a few can magnify up to 1500X. Electrons, like electromagnetic radiation, can behave like waves, but with wavelengths of 0.005 nm, they produce significantly greater resolution up to 0.05 nm as compared to 500 nm for visible light. An electron microscope (EM) can create a sharp image that is magnified up to 2,000,000X.
Scanning Electron Microscopy
A scanning electron microscope (SEM) is used to study the surface features of a sample by using an electron beam that scans the sample surface in a two-dimensional manner. Typically, areas between ~1 centimeter to 5 micrometers in width can be imaged. SEM can be used to image bacteria, viruses, tissues as well as larger samples like insects. Conventional SEM gives a magnification ranging from 20X to 30,000X and spatial resolution of 50 to 100 nanometers.
Fundamental Principles
Accelerated...
Fundamental Principles
Accelerated...
Transmission Electron Microscopy
In 1931, physicist Ernst Ruska—building on the idea that magnetic fields can direct an electron beam just as lenses can direct a beam of light in an optical microscope—developed the first prototype of the electron microscope. This development led to the development of the field of electron microscopy. In the transmission electron microscope (TEM), electrons are produced by a hot tungsten element and accelerated by a potential difference in an electron gun, which gives them up to 400 keV in...
Electron Microscope Tomography and Single-particle Reconstruction
Transmission electron microscopy (TEM) can be used to determine the 3D structure of biological samples with the help of techniques such as electron microscope tomography and single-particle reconstruction. While single-particle reconstruction can examine macromolecules and macromolecular complexes in vitro conditions only, tomography permits the study of cell components or small cells in vivo.
Electron Tomography
Electron tomography can be performed either in TEM or STEM (scanning transmission...
Electron Tomography
Electron tomography can be performed either in TEM or STEM (scanning transmission...
Overview of Microscopy Techniques
The early pioneers of microscopy opened a window into the invisible world of microorganisms. In 1830, Joseph Jackson Lister created an essentially modern light microscope. The 20th century saw the development of microscopes that leveraged nonvisible light, such as fluorescence microscopy that uses an ultraviolet light source and electron microscopy that uses short-wavelength electron beams. These advances significantly improved magnification, image resolution, and contrast. By comparison, the...


