[根据基础模型预测MHC II抗原-T细胞受体的结合]
Minrui Xu1,2, Siwen Zhang3, Manman Lu2
1School of Health Science and Engineering, University of Shanghai for Science and Technology, Shanghai 200093, P. R. China.
概括
这项研究通过开发一种新型模型来增强T细胞受体 (TCR) 对癌症疫苗的预测,该模型用于主要基因相容性复合体 (MHC) II类抗原. 这种新方法显著提高了预测准确度,推动了免疫治疗的发展.
科学领域:
- 免疫学 免疫学 免疫学
- 计算生物学 计算生物学
- 疫苗开发 疫苗开发
背景情况:
- 结合抗原的T细胞受体 (TCR) 对免疫反应和瘤疫苗开发至关重要.
- 目前的研究主要集中在对MHC类I的TCR预测上,对MHC类II的研究有限.
研究的目的:
- 用先进的深度学习模型研究MHCII类抗原和TCR预测的组合.
- 提高MHCII类抗原TCR预测的准确性和有效性.
主要方法:
- 利用ProtT5大模型从MHCII类抗原和TCR中提取特征.
- 微调了ProtT5模型并将其与一个前神经网络集成为一个融合预测模型.
主要成果:
- 与传统方法相比,拟议的模型表现出优越的性能.
- 实现了0.96的预测准确度和0.93.9的曲线下的面积 (AUC).
结论:
- 开发的模型有效地预测MHCII类抗原的TCR.
- 这一进步为开发新型瘤疫苗和免疫疗法带来了巨大的潜力.
更多相关视频
09:53Using X-ray Crystallography, Biophysics, and Functional Assays to Determine the Mechanisms Governing T-cell Receptor Recognition of Cancer Antigens
Published on: February 6, 2017
11.4K
09:32Immunopeptidomics: Isolation of Mouse and Human MHC Class I- and II-Associated Peptides for Mass Spectrometry Analysis
Published on: October 15, 2021
11.5K
相关概念视频
Antigen Processing Pathways
886
MHC molecules are key players in the immune response, enabling T cells to recognize and respond to specific antigens. They are present on the surface of all nucleated cells in the body and are instrumental in presenting antigens to T cells and activating them. T cells recognize the MHC-antigen complex and initiate an immune response. MHC class I and MHC class II are two main types of MHC molecules, each associated with a distinct antigen processing pathway.
MHC Class I: Presenting Endogenous...
MHC Class I: Presenting Endogenous...
886
Antigens Involved in Adaptive Immunity
436
An antigen is any substance the immune system identifies as foreign and potentially harmful to the body, prompting an immune response. Antigens have two functional properties: immunogenicity and reactivity. Immunogenicity is the ability of an antigen to stimulate a specific immune response. At the same time, reactivity describes the antigen's ability to react with the cells and antibodies produced in response to it.
Complete Antigens
Complete antigens possess both immunogenicity and...
Complete Antigens
Complete antigens possess both immunogenicity and...
436
T Cell Activation and Clonal Selection
625
T cells are integral to our adaptive immune system, recognizing and effectively responding to foreign antigens. T cell activation and clonal selection are pivotal in orchestrating this immune response. This article elucidates these mechanisms, detailing the roles of cluster of differentiation (CD) markers, major histocompatibility complex (MHC) molecules, costimulatory signals, and the process of clonal selection.
Naive T cells that have not yet encountered an antigen express two primary CD...
Naive T cells that have not yet encountered an antigen express two primary CD...
625
Ligand Binding Sites
12.6K
Proteins are dynamic macromolecules that carry out a wide variety of essential processes; however, the activities of most proteins depend on their interactions with other molecules or ions, known as ligands.
Protein-ligand interactions are quite specific; even though numerous potential ligands surround a cellular protein at any given time, only a particular ligand can bind to that protein. Moreover, a ligand binds only to a dedicated area on the surface of the protein, known as the...
Protein-ligand interactions are quite specific; even though numerous potential ligands surround a cellular protein at any given time, only a particular ligand can bind to that protein. Moreover, a ligand binds only to a dedicated area on the surface of the protein, known as the...
12.6K
