核酸对频率和同义码子在牛病毒性腹病毒进化中的作用
Xili Feng1,2, Zeyu Liu1, Yongli Mo1
1Key Laboratory of Biotechnology and Bioengineering of State Ethnic Affairs Commission, Biomedical Research Center, Northwest Minzu University, Lanzhou, 730030, China.
Archives of virology
|February 26, 2025
概括
牛病毒性腹病毒 (BVDV) 编码使用模式因基因型而异,受宿主适应和病毒突变率的影响. 这些发现提供了对病毒进化和宿主-病原体相互作用的见解.
科学领域:
- 病毒学 病毒学
- 基因组学就是基因组学.
- 分子生物学分子生物学
背景情况:
- 同义代码子的使用对于病毒适应宿主至关重要.
- 牛病毒性腹病毒 (BVDV) 对宿主体质的突变率很高.
- 驱动跨基因型的BVDV核酸和密码体使用模式的选择性力量尚未完全理解.
研究的目的:
- 分析不同BVDV基因型中的核酸对和同名密码体使用模式.
- 调查影响这些模式的选择性力量.
主要方法:
- 分析了来自全球不同地区和隔离时间的169个BVDV菌株.
- 比较二核酸的频率和同义码子的使用.
- 检查病毒开放阅读框架 (ORF) 中的核酸使用偏差.
主要成果:
- 在BVDV ORF中, purin比pyrimidine的频率更高,偏差在第一个编码子位置最强.
- 在所有BVDV基因型中观察到有利于CpG二核酸的显著偏差.
- 核酸组成和二核酸偏差影响总体的密码子使用.
- 与BVDV-2和BVDV-3相比,BVDV-1在核酸对和密码体使用方面表现出更大的变异.
结论:
- 核酸组合约束和二核酸偏差显著影响了BVDV编码子的使用.
- 代码子使用的基因型差异表明了不同的进化压力.
- 病毒突变选择和宿主转化选择都影响BVDV密码体使用模式.
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