在TOPMed中对表达和拼接定量特征位点的交叉队列分析
Peter Orchard1, Thomas W Blackwell2,3, Linda Kachuri4
1Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA.
medRxiv : the preprint server for health sciences
|March 4, 2025
概括
大规模的遗传分析揭示了大量的二次表达定量特征位置 (eQTL) 信号,改善了对复杂特征和疾病的全基因组关联研究 (GWAS) 的解释.
科学领域:
- 基因组学就是基因组学.
- 分子生物学分子生物学
- 统计遗传学 统计遗传学
背景情况:
- 大多数与复杂的特征和疾病相关的遗传变异都存在于非编码区域,可能调节基因表达.
- 了解基因表达变异性对于解释这些遗传关联至关重要.
研究的目的:
- 用一个大而多样化的数据集来描述基因表达的遗传调节.
- 为了识别cis和trans表达和拼接定量特征位置 (e/sQTLs).
- 改进全基因组关联研究 (GWAS) 信号的解释.
主要方法:
- 分析了来自NHLBI Trans-Omics for Precision Medicine (TOPMed) 计划的14324个RNA测序样本.
- 整合全基因组测序数据用于六种组织的cis-和trans-e/sQTL分析.
- 精确地绘制了英国BioBank GWAS信号,并将它们与TOPMed e/sQTL数据进行同地化.
主要成果:
- 该数据集使得二次cis-e/sQTL信号的增强检测成为可能.
- 目前正在发现二次 cis-eQTL 和初级 trans-eQTL 信号.
- 大多数跨-eQTL信号与cis-e/sQTL信号共定位,表明调解.
- 很大一部分精细映射的GWAS信号与二级e/sQTL信号共定位.
结论:
- 较大的e/sQTL分析在发现新的二次信号方面是有效的.
- 这些新发现的信号显著提高了对复杂特征和疾病的GWAS发现的解释.
相关概念视频
Comparing Copy Number Variations and SNPs
Sequencing of the human genome has opened up several best-kept secrets of the genome. Scientists have identified thousands of genome variations that exist within a population. These variations can be a single nucleotide or a larger chromosomal variation.
Copy number variations or CNVs are the structural variations that cover more than 1kb of DNA sequence. The single nucleotide polymorphism (SNP), on the other hand, is a single nucleotide change or a point mutation that is found in more than 1%...
Copy number variations or CNVs are the structural variations that cover more than 1kb of DNA sequence. The single nucleotide polymorphism (SNP), on the other hand, is a single nucleotide change or a point mutation that is found in more than 1%...
Single Nucleotide Polymorphisms-SNPs
A single nucleotide polymorphism or SNP is a single nucleotide variation at a specific genomic position in a large population. It is the most prevalent type of sequence variation found in the human genome. Point mutations that occur in more than 1% of the population qualify as SNPs. These are present once every 1000 nucleotides on an average in the human genome. Replacement of a purine with another purine (A/G) or a pyrimidine with another pyrimidine (C/T) is known as a transition. In contrast,...
Regulation of Expression at Multiple Steps
The gene expression in cells is regulated at different stages: (i) transcription, (ii) RNA processing, (iii) RNA localization, and (iv) translation. Transcriptional regulation is mediated by regulatory proteins such as transcription factors, activators, or repressors—these control gene expression by initiating or inhibiting the transcription of genes. Once a precursor or pre-mRNA is produced, it undergoes post-transcriptional modification, including 5' capping, splicing, and the addition of a...


