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细胞类型不可知的转录组签名使神经发育的统一比较成为可能
Sridevi Venkatesan1,2,3, Jonathan M Werner3, Yun Li2,4
1Department of Physiology, University of Toronto, Canada.
bioRxiv : the preprint server for biology
|March 10, 2025
概括
从脑细胞转录组预测发育年龄现在是可能的. 一个新的细胞不可知模型准确地跟踪了跨物种和模型的神经发育,为比较分析提供了一个统一的框架.
科学领域:
- 神经科学是一个神经科学.
- 基因组学就是基因组学.
- 发展生物学 发展生物学
背景情况:
- 单细胞转录学促进了对神经发育细胞类型的理解.
- 从转录基因数据中预测细胞发育阶段仍然很困难.
研究的目的:
- 开发一种可靠的方法,从细胞转录组中预测发育年龄.
- 建立一个统一的框架来比较神经发育在不同的背景,模型系统和物种.
主要方法:
- 对超过280万个人类发育中的脑细胞进行了元分析.
- 训练正规化回归模型以推断细胞自主成熟.
- 开发一种细胞类型不可知模型来预测发育年龄.
主要成果:
- 一种细胞类型不可知模型准确地预测了不同数据集和细胞类型的发育年龄 (2.6周误差).
- 该模型通用于人类神经器官,预测正常和疾病引起的发育变化.
- 该模型显示,与人类相比,小鼠大脑的发育速度加快.
结论:
- 一个统一的,细胞不可知的方法从转录基因数据准确量化神经发育年龄.
- 这一框架使得能够对不同物种和实验模型中神经发育进行可靠的比较.
- 这些发现为大脑发育的保存和分歧模式提供了新的见解.
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相关概念视频
Transcription
Overview
Transcription is the process of synthesizing RNA from a DNA sequence by RNA polymerase. It is the first step in producing a protein from a gene sequence. Additionally, many other proteins and regulatory sequences are involved in the proper synthesis of messenger RNA (mRNA). Regulation of transcription is responsible for the differentiation of all the different types of cells and often for the proper cellular response to environmental signals.
Transcription Can Produce Different Kinds...
Transcription is the process of synthesizing RNA from a DNA sequence by RNA polymerase. It is the first step in producing a protein from a gene sequence. Additionally, many other proteins and regulatory sequences are involved in the proper synthesis of messenger RNA (mRNA). Regulation of transcription is responsible for the differentiation of all the different types of cells and often for the proper cellular response to environmental signals.
Transcription Can Produce Different Kinds...
Master Transcription Regulators
Master transcription regulators are regulatory proteins that are predominantly responsible for regulating the expression of multiple genes. Often these genes work in concert to drive a complex process. Activation of a master transcription regulator can lead to a cascade of transcriptional activation necessary for that outcome. These regulators can directly bind to the regulatory sequences of the various genes involved, or they can indirectly regulate transcription by binding to regulatory...
Exon Recombination
The evolution of new genes is critical for speciation. Exon recombination, also known as exon shuffling or domain shuffling, is an important means of new gene formation. It is observed across vertebrates, invertebrates, and in some plants such as potatoes and sunflowers. During exon recombination, exons from the same or different genes recombine and produce new exon-intron combinations, which might evolve into new genes.
Exon shuffling follows “splice frame rules.” Each exon has three reading...
Exon shuffling follows “splice frame rules.” Each exon has three reading...
Transcription
Transcription is the synthesis of RNA from a DNA sequence by RNA polymerase. It is the first step in producing a protein from a gene sequence. Additionally, many other proteins and regulatory sequences are involved in correctly synthesizing messenger RNA (mRNA). Transcriptional regulation is responsible for the differentiation of different types of cells and often for the proper cellular response to environmental signals.
Transcription Can Produce Different Kinds of RNA Molecules
In eukaryotes,...
Transcription Can Produce Different Kinds of RNA Molecules
In eukaryotes,...
General Transcription Factors
Tissue-specific transcription factors contribute to diverse cellular functions in mammals. For example, the gene for beta globin, a major component of hemoglobin, is present in all cells of the body. However, it is only expressed in red blood cells because the transcription factors that can bind to the promoter sequences of the beta globin gene are only expressed in these cells. Tissue-specific transcription factors also ensure that mutations in these factors may impair only the function of...