均质催化剂图形神经网络:一种人类可解释的图形神经网络工具,用于在不对称催化剂中对联体优化
Eduardo Aguilar-Bejarano1,2,3, Ender Özcan3, Raja K Rit1,2
1GSK Carbon Neutral Laboratories for Sustainable Chemistry, University of Nottingham, Jubilee Campus, Triumph Road, Nottingham NG7 2TU, UK.
iScience
|March 10, 2025
概括
本研究介绍了HCat-GNet,这是一种预测催化剂选择性的机器学习模型,显著改善了对不对称催化剂的联体优化. 它确定了影响选择性的关键连接体原子,减少了低效的经验试验.
科学领域:
- 催化剂是一种催化剂.
- 机器学习 机器学习
- 计算化学的计算化学
背景情况:
- 传统的金属联体催化剂优化依赖于低效的经验试验.
- 开发新的,高度选择性的不对称催化剂对于化学合成至关重要.
研究的目的:
- 引入HCat-GNet,一种用于预测非对称催化剂中的enantioselectivity的机器学习模型.
- 提供一种可解释的方法来识别影响催化剂性能的关键连接体结构特征.
- 证明模型能够推断出新型联体结构,并在不同的反应中进行概括.
主要方法:
- 开发同质催化剂图神经网络 (HCat-GNet) 模型.
- 通过SMILES分子表示来训练模型,以预测反应的抗选择性.
- 使用可解释性特征来识别连接体内的有影响力的原子.
- 对一种新的类型的催化不对称的1,4-加法联体和基准数据集的验证.
主要成果:
- HCat-GNet准确地预测了对不对称反应的酶选择性.
- 该模型提供了关于连接体对选择性的贡献的原子层次见解.
- 证明了成功地将新奇的性联结体空间推断到新奇的性联结体空间.
- 证实了不同不对称反应的概括性.
结论:
- HCat-GNet提供了一种高效的,数据驱动的方法,用于在不对称催化中优化联体.
- 该模型的可解释性促进了合理的催化剂设计.
- HCat-GNet代表了计算催化剂开发的重大进步.
相关概念视频
Reduction of Alkenes: Asymmetric Catalytic Hydrogenation
3.2K
Catalytic hydrogenation of alkenes is a transition-metal catalyzed reduction of the double bond using molecular hydrogen to give alkanes. The mode of hydrogen addition follows syn stereochemistry.
The metal catalyst used can be either heterogeneous or homogeneous. When hydrogenation of an alkene generates a chiral center, a pair of enantiomeric products is expected to form. However, an enantiomeric excess of one of the products can be facilitated using an enantioselective reaction or an...
The metal catalyst used can be either heterogeneous or homogeneous. When hydrogenation of an alkene generates a chiral center, a pair of enantiomeric products is expected to form. However, an enantiomeric excess of one of the products can be facilitated using an enantioselective reaction or an...
3.2K
Ligand Binding and Linkage
4.7K
Allosteric proteins have more than one ligand binding site; the binding of a ligand to any of these sites influences the binding of ligands to the other sites. When a protein is allosteric, its binding sites are called coupled or linked. In the case of enzymes, the site that binds to the substrate is known as the active site and the other site is known as the regulatory site. When a ligand binds to the regulatory site, this leads to conformational changes in the protein that can influence...
4.7K
Ligand Binding Sites
12.6K
Proteins are dynamic macromolecules that carry out a wide variety of essential processes; however, the activities of most proteins depend on their interactions with other molecules or ions, known as ligands.
Protein-ligand interactions are quite specific; even though numerous potential ligands surround a cellular protein at any given time, only a particular ligand can bind to that protein. Moreover, a ligand binds only to a dedicated area on the surface of the protein, known as the...
Protein-ligand interactions are quite specific; even though numerous potential ligands surround a cellular protein at any given time, only a particular ligand can bind to that protein. Moreover, a ligand binds only to a dedicated area on the surface of the protein, known as the...
12.6K
Catalysis
26.5K
The presence of a catalyst affects the rate of a chemical reaction. A catalyst is a substance that can increase the reaction rate without being consumed during the process. A basic comprehension of a catalysts’ role during chemical reactions can be understood from the concept of reaction mechanisms and energy diagrams.
26.5K
Enzymes
80.4K
Inside living organisms, enzymes act as catalysts for many biochemical reactions involved in cellular metabolism. The role of enzymes is to reduce the activation energies of biochemical reactions by forming complexes with its substrates. The lowering of activation energies favor an increase in the rates of biochemical reactions.
Enzyme deficiencies can often translate into life-threatening diseases. For example, a genetic abnormality resulting in the deficiency of the enzyme G6PD...
Enzyme deficiencies can often translate into life-threatening diseases. For example, a genetic abnormality resulting in the deficiency of the enzyme G6PD...
80.4K
Catalytically Perfect Enzymes
3.8K
The theory of catalytically perfect enzymes was first proposed by W.J. Albery and J. R. Knowles in 1976. These enzymes catalyze biochemical reactions at high-speed. Their catalytic efficiency values range from 108-109 M-1s-1. These enzymes are also called 'diffusion-controlled' as the only rate-limiting step in the catalysis is that of the substrate diffusion into the active site. Examples include triose phosphate isomerase, fumarase, and superoxide dismutase.
Most enzymes...
Most enzymes...
3.8K


