深层细胞突变发生揭示了氨基酸插入和删除对蛋白质稳定性和功能的影响
Magdalena Topolska1,2, Antoni Beltran1, Ben Lehner3,4,5,6
1Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain.
Nature communications
|March 18, 2025
概括
氨基酸插入和删除 (indels) 显著影响蛋白质的稳定性,但其影响尚不清楚. 一个新的计算模型INDELi准确地预测了INDEL对蛋白质稳定性和致病性的影响,有助于全基因组分析.
科学领域:
- 基因组学就是基因组学.
- 蛋白质组学是指蛋白质组学.
- 计算生物学 计算生物学
背景情况:
- 氨基酸插入和删除 (indels) 是常见的遗传变异.
- 印特尔对蛋白质稳定性的功能影响比替代品的理解要少.
- 现有的计算方法很难预测蛋白质稳定性的某些影响.
研究的目的:
- 通过使用深突变发生 (DIM) 数据,分析英德尔对蛋白质稳定性的影响.
- 开发一个对蛋白质稳定性和病原性的影响的预测模型.
- 研究英德尔在蛋白质与蛋白质相互作用中的作用以及潜在的功能增益效应.
主要方法:
- 分析来自不同蛋白质的大规模深层突变发生的数据.
- 开发INDELi模型,整合替代效应和二次结构信息.
- 对蛋白质与蛋白质相互作用的indel影响的量化.
主要成果:
- 印德尔对蛋白质稳定性的影响是高度可变的,目前的方法无法很好地预测.
- 该INDELi模型准确地预测了indels对蛋白质稳定性和致病性的影响.
- 插入可以通过影响蛋白质-蛋白质相互作用来充当功能增益变体.
结论:
- 印度尔对蛋白质的结构和功能有着显著而复杂的影响.
- INDELi模型为预测全基因组的indel效应提供了一个强大的工具.
- 了解indel影响对于解释遗传变异和疾病相关性至关重要.
相关概念视频
Mutations
77.9K
Overview
77.9K
Protein Folding
117.0K
Overview
117.0K
Protein Denaturation
3.7K
The function of proteins depends on their native three-dimensional structure, which is dictated by the amino acid sequence of the specific protein. Folding of the polypeptide chain takes place under specific conditions that energetically favor the folded conformation. In contrast, protein denaturation occurs spontaneously under unfavorable conditions that disrupt the integrity of the folded conformation. Thus, the chemical and physical environment of a protein, such as significant changes in pH...
3.7K
Covalently Linked Protein Regulators
6.7K
Proteins can undergo many types of post-translational modifications, often in response to changes in their environment. These modifications play an important role in the function and stability of these proteins. Covalently linked molecules include functional groups, such as methyl, acetyl, and phosphate groups, and also small proteins, such as ubiquitin. There are around 200 different types of covalent regulators that have been identified.
These groups modify specific amino acids in a protein....
These groups modify specific amino acids in a protein....
6.7K
RNA Stability
33.1K
Intact DNA strands can be found in fossils, while scientists sometimes struggle to keep RNA intact under laboratory conditions. The structural variations between RNA and DNA underlie the differences in their stability and longevity. Because DNA is double-stranded, it is inherently more stable. The single-stranded structure of RNA is less stable but also more flexible and can form weak internal bonds. Additionally, most RNAs in the cell are relatively short, while DNA can be up to 250 million...
33.1K
Amyloid Fibrils
9.1K
Amyloid fibrils are aggregates of misfolded proteins. Under most circumstances, misfolded proteins are either refolded by chaperone proteins or degraded by the proteasome. However, in the case of a mutation or a disease, these proteins can accumulate to form large clusters and often further assemble to form elongated fibers, called fibrils.
Amyloid deposits were observed as early as 1639 in the liver and the spleen. In 1854, Rudolph Virchow performed iodine staining,...
Amyloid deposits were observed as early as 1639 in the liver and the spleen. In 1854, Rudolph Virchow performed iodine staining,...
9.1K


