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相关概念视频

Phylogeny01:23

Phylogeny

43.4K
Phylogeny is concerned with the evolutionary diversification of organisms or groups of organisms. A group of organisms with a name is called a taxon (singular). Taxa (plural) can span different levels of the evolutionary hierarchy. For instance, the group containing all birds is a taxon (comprising the class Aves), and the group of all species of daisies (the genus Bellis) is a taxon. Phylogenies can likewise include just one genus (i.e., depict species relationships) or span an entire kingdom.
43.4K
Phylogenetic Trees03:21

Phylogenetic Trees

45.0K
Phylogenetic trees come in many forms. It matters in which sequence the organisms are arranged from the bottom to the top of the tree, but the branches can rotate at their nodes without altering the information. The lines connecting individual nodes can be straight, angled, or even curved.
45.0K
Evolutionary Relationships through Genome Comparisons02:54

Evolutionary Relationships through Genome Comparisons

5.6K
Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
5.6K
Genome Size and the Evolution of New Genes03:21

Genome Size and the Evolution of New Genes

7.8K
While every living organism has a genome of some kind (be it RNA, or DNA), there is considerable variation in the sizes of these blueprints. One major factor that impacts genome size is whether the organism is prokaryotic or eukaryotic. In prokaryotes, the genome contains little to no non-coding sequence, such that genes are tightly clustered in groups or operons sequentially along the chromosome. Conversely, the genes in eukaryotes are punctuated by long stretches of non-coding sequence.
7.8K
Gene Evolution - Fast or Slow?02:05

Gene Evolution - Fast or Slow?

7.0K
The genomes of eukaryotes are punctuated by long stretches of sequence which do not code for proteins or RNAs. Although some of these regions do contain crucial regulatory sequences, the vast majority of this DNA serves no known function. Typically, these regions of the genome are the ones in which the fastest change, in evolutionary terms, is observed, because there is typically little to no selection pressure acting on these regions to preserve their sequences.
In contrast, regions which code...
7.0K
Comparing Mitochondrial, Chloroplast, and Prokaryotic Genomes02:16

Comparing Mitochondrial, Chloroplast, and Prokaryotic Genomes

11.9K
The present-day mitochondrial and chloroplast genomes have retained some of the characteristics of their ancestral prokaryotes and also have acquired new attributes during their evolution within eukaryotic cells. Like prokaryotic genomes, mitochondrial and chloroplast genomes neither bind with histone-like proteins nor show complex packaging into chromosome-like structures, as observed in eukaryotes. Unlike mitotic cell divisions observed in eukaryotic cells, mitochondria and chloroplasts...
11.9K

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相关实验视频

Updated: May 21, 2025

A Practical Guide to Phylogenetics for Nonexperts
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A Practical Guide to Phylogenetics for Nonexperts

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CompactTree:一个轻量级的只有头部的C ++库和Python包装器,用于超大类遗传学.

Niema Moshiri1

  • 1Department of Computer Science & Engineering, UC San Diego, La Jolla, CA 92093, USA.

GigaByte (Hong Kong, China)
|March 20, 2025
PubMed
概括
此摘要是机器生成的。

现有的树木图书馆在与大型的树系学系作斗争. 带有Python包装的新C++库CompactTree有效地处理超大类遗传树,为病毒和细菌物种研究提供了显著的速度和内存改进.

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Using Phylogenetic Analysis to Investigate Eukaryotic Gene Origin
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Using Phylogenetic Analysis to Investigate Eukaryotic Gene Origin

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The ITS2 Database
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The ITS2 Database

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相关实验视频

Last Updated: May 21, 2025

A Practical Guide to Phylogenetics for Nonexperts
12:00

A Practical Guide to Phylogenetics for Nonexperts

Published on: February 5, 2014

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Using Phylogenetic Analysis to Investigate Eukaryotic Gene Origin
08:57

Using Phylogenetic Analysis to Investigate Eukaryotic Gene Origin

Published on: August 14, 2018

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The ITS2 Database
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The ITS2 Database

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科学领域:

  • 计算生物学 计算生物学
  • 生物信息学是一种生物信息学.
  • 人类遗传学 是一个学科.

背景情况:

  • 分析病毒和细菌物种需要处理具有数百万个尖端的极大类遗传树.
  • 当前的树处理软件往往无法有效地扩展到这些庞大的数据集.

研究的目的:

  • 介绍CompactTree,一个新的C++库,旨在高效地穿越超大族系.
  • 提供一个用户友好的Python包装,以无集成到现有的生物信息工作流程中.

主要方法:

  • 开发了一个名为 CompactTree.tree 的轻量级,仅用于头部的 C++ 库.
  • 实施Python包装程序以提高可用性和可访问性.
  • 与现有的家族遗传树库进行性能比较.

主要成果:

  • 与现有解决方案相比,CompactTree显示了速度的数量级改进.
  • CompactTree 需要的内存少得多,因此适合进行大规模的遗传学分析.
  • 该库很容易与其他计算工具集成.

结论:

  • CompactTree提供了一个可扩展和高效的解决方案,用于导航超大类遗传树.
  • 这一进步促进了对病毒和细菌多样性的更全面的研究.
  • 开源的可用性促进了生物信息学的更广泛的采用和进一步发展.