高阶迈凯利斯-门方程允许推断酶催化过程中隐藏的动力参数
Divya Singh1, Tal Robin2, Michael Urbakh1
1School of Chemistry, The Center for Physics and Chemistry of Living Systems, The Raymond and Beverly Sackler Center for Computational Molecular and Materials Science, and The Mark Ratner Institute for Single Molecule Chemistry, Tel Aviv University, 6997801, Tel Aviv, Israel.
Nature communications
|March 21, 2025
概括
新的高阶迈凯利斯-门方程扩展了单分子酶动力学. 这些方程揭示了酶基质复合物的寿命,结合率和产物形成概率,为酶反应提供了更深入的见解.
科学领域:
- 生物化学 生物化学
- 化学动力学 化学动力学
- 单分子生物物理 单分子生物物理
背景情况:
- 单分子测量对于研究酶动力学至关重要.
- 迈凯利斯-门方程描述了酶动力学,但提供了有限的信息.
- 关键参数,如酶基质复合物的生命周期和结合率,在标准方程中是无法实现的.
研究的目的:
- 导出和验证高阶迈凯利斯-门方程,以进行增强的动力分析.
- 从单分子数据推断以前无法获得的酶动力学参数.
- 将迈凯利斯-门框架推广到更高层次的交换时间时刻.
主要方法:
- 一组高阶迈凯利斯-门方程的导数.
- 对基质度互动和周转时间时刻之间的线性关系的分析.
- 导出方程的应用以推断酶动力学参数.
主要成果:
- 高阶迈凯利斯-门方程揭示了普遍的线性关系.
- 成功推断了酶-基质复合物的生命周期,基质-酶结合率和产品形成概率.
- 推断程序在成千上万的营业额事件中表现出稳健性.
结论:
- 高阶迈凯利斯-门方程为单分子酶动力学提供了一个全面的框架.
- 这些方程解锁了超越Vmax和Km的关键动力观测值的访问.
- 开发的方法为详细的酶反应分析提供了强大而准确的方法.
相关概念视频
Nonlinear Pharmacokinetics: Michaelis-Menten Equation
184
The Michaelis–Menten equation is a fundamental model for describing capacity-limited kinetics in drug metabolism. It offers insights into the rate of decline of plasma drug concentration Cp over time, with Vmax and KM as pivotal parameters.
Vmax represents the maximum achievable process rate, while KM, known as the Michaelis constant, signifies the drug concentration at which the process rate reaches half its maximum. This relationship between Vmax, KM, and Cp gives rise to three distinct...
Vmax represents the maximum achievable process rate, while KM, known as the Michaelis constant, signifies the drug concentration at which the process rate reaches half its maximum. This relationship between Vmax, KM, and Cp gives rise to three distinct...
184
Introduction to Enzyme Kinetics
19.6K
Enzyme kinetics studies the rates of biochemical reactions. Scientists monitor the reaction rates for a particular enzymatic reaction at various substrate concentrations. Additional trials with inhibitors or other molecules that affect the reaction rate may also be performed.
The experimenter can then plot the initial reaction rate or velocity (Vo) of a given trial against the substrate concentration ([S]) to obtain a graph of the reaction properties. For many enzymatic reactions involving a...
The experimenter can then plot the initial reaction rate or velocity (Vo) of a given trial against the substrate concentration ([S]) to obtain a graph of the reaction properties. For many enzymatic reactions involving a...
19.6K
Enzyme Kinetics
95.5K
Enzymes speed up reactions by lowering the activation energy of the reactants. The speed at which the enzyme turns reactants into products is called the rate of reaction. Several factors impact the rate of reaction, including the number of available reactants. Enzyme kinetics is the study of how an enzyme changes the rate of a reaction.
Scientists typically study enzyme kinetics with a fixed amount of enzyme in the controlled environment of a test tube. When more reactant, or substrate, is...
Scientists typically study enzyme kinetics with a fixed amount of enzyme in the controlled environment of a test tube. When more reactant, or substrate, is...
95.5K
Determination of Michaelis Constant and Maximum Elimination Rate
54
The Michaelis constant (KM) and the theoretical maximum process rate (Vmax) are vital parameters in the Michaelis-Menten equation, central to many biochemical reactions. They provide essential insights into enzyme kinetics and drug metabolism.
These parameters can be estimated by analyzing plasma concentration data post-drug administration. A notable example of this application is phenytoin, a drug with capacity-limited kinetics. It's recommended that phenytoin should be administered at two...
These parameters can be estimated by analyzing plasma concentration data post-drug administration. A notable example of this application is phenytoin, a drug with capacity-limited kinetics. It's recommended that phenytoin should be administered at two...
54
Catalytically Perfect Enzymes
3.8K
The theory of catalytically perfect enzymes was first proposed by W.J. Albery and J. R. Knowles in 1976. These enzymes catalyze biochemical reactions at high-speed. Their catalytic efficiency values range from 108-109 M-1s-1. These enzymes are also called 'diffusion-controlled' as the only rate-limiting step in the catalysis is that of the substrate diffusion into the active site. Examples include triose phosphate isomerase, fumarase, and superoxide dismutase.
Most enzymes...
Most enzymes...
3.8K
Introduction to Mechanisms of Enzyme Catalysis
7.8K
For many years, scientists thought that enzyme-substrate binding took place in a simple "lock-and-key" fashion. This model stated that the enzyme and substrate fit together perfectly in one instantaneous step. However, current research supports a more refined view scientists call induced fit. The induced-fit model expands upon the lock-and-key model by describing a more dynamic interaction between enzyme and substrate. As the enzyme and substrate come together, their interaction causes...
7.8K


