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相关概念视频

Single-pass Transmembrane Proteins01:25

Single-pass Transmembrane Proteins

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Integral membrane proteins are tightly associated with the cell membrane and play a crucial role in cell communication, signaling, adhesion, and transport of the molecules. Some integral membrane proteins are present only in the membrane monolayer. For example, the enzyme fatty acid amide hydrolase is present in the cytoplasmic side of the membrane monolayer. In contrast, another type of integral membrane protein, also known as a transmembrane protein, spans across the membrane. Transmembrane...
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Translocation of Proteins into the Mitochondria01:19

Translocation of Proteins into the Mitochondria

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Mitochondrial precursors are translocated to the internal subcompartments via independent mechanisms involving distinct protein machineries called translocases.
Sorting of outer membrane proteins:
Mitochondrial outer membrane proteins are of two types: the transmembrane, beta-barrel porins, and the membrane-anchored, alpha-helical proteins. Beta-barrel porin precursors are translocated by the TOM complex and inserted into the outer mitochondrial membrane by the SAM complex. In contrast,...
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Multi-pass Transmembrane Proteins and β-barrels01:09

Multi-pass Transmembrane Proteins and β-barrels

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In multi-pass transmembrane proteins, the polypeptide chain crosses the membrane more than once. The transmembrane polypeptide chain either forms an α-helix or β-strand structure. α-Helix containing multi-pass transmembrane proteins are ubiquitous, whereas β-strand containing ones are mainly found in gram-negative bacteria, mitochondria, and chloroplasts.
α-Helix containing multi-pass transmembrane proteins
Multi-pass transmembrane proteins such as...
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Primary Active Transport01:29

Primary Active Transport

9.5K
In contrast to passive transport, active transport involves a substance being moved through membranes in a direction against its concentration or electrochemical gradient. There are two types of active transport: primary active transport and secondary active transport. Primary active transport utilizes chemical energy from ATP to drive protein pumps embedded in the cell membrane. With energy from ATP, the pumps transport ions against their electrochemical gradients—a direction they would...
9.5K
The Significance of Membrane Transport01:44

The Significance of Membrane Transport

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The transport of solutes across the cell membrane is essential for metabolic processes, like maintaining cell size and volume, generating the action potential, exchanging nutrients and gases, etc. Membrane transport can be either passive or active. It can be simple diffusion, facilitated, or mediated transport aided by transport proteins such as transporters and channels.
Transporters facilitate either an active or passive movement of solutes. They can allow a single-molecule transport down its...
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Insertion of Multi-pass Transmembrane Proteins in the RER01:29

Insertion of Multi-pass Transmembrane Proteins in the RER

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The rough ER membrane synthesizes, assembles, and embeds transmembrane proteins in diverse topologies. These proteins function as transporters or channels and can remain in the ER membrane or are sent to the Golgi complex, lysosome, and cell membrane.
The multipass transmembrane proteins are the type IV integral membrane proteins with multiple topogenic sequences determining their spatial arrangement in the ER membrane. Nearly all multipass proteins lack a cleavable signal sequence and use...
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相关实验视频

Updated: May 20, 2025

Fluorescent Leakage Assay to Investigate Membrane Destabilization by Cell-Penetrating Peptide
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使用基于分子注意力变压器的深度学习模型预测循环化物膜的透性.

Dawei Jiang1, Zixi Chen2,3, Hongli Du1

  • 1School of Biology and Biological Engineering, South China University of Technology, Guangzhou, China.

Frontiers in bioinformatics
|March 26, 2025
PubMed
概括

一个新的计算模型,CPMP,准确地预测循环类药物膜的透性. 该工具通过克服昂贵的实验测试和稀缺的预测方法来帮助药物开发.

关键词:
这是一种循环类.深度学习是一种深度学习.膜的透性 膜的透性分子注意力变压器变压器帕帕帕帕帕帕帕帕帕帕帕帕帕帕帕帕帕帕帕帕帕帕帕帕帕帕帕帕帕帕帕帕帕

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Measuring Peptide Translocation into Large Unilamellar Vesicles
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Measuring Peptide Translocation into Large Unilamellar Vesicles

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相关实验视频

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Construction of Cyclic Cell-Penetrating Peptides for Enhanced Penetration of Biological Barriers
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科学领域:

  • 计算化学是一种计算化学.
  • 药理学 药理学是指药理学的学科.
  • 药物发现 药物发现

背景情况:

  • 膜透性是开发循环药物的关键挑战.
  • 实验性透性测试是昂贵和耗时的.
  • 对于循环质膜透性的准确的in silico预测工具是有限的.

研究的目的:

  • 开发一种先进的计算模型,用于预测循环胺膜的透性.
  • 提高药物开发管道的效率和准确性.

主要方法:

  • 使用分子注意力变压器 (MAT) 框架开发周期性片膜透性 (CPMP) 模型.
  • 使用PAMPA,Caco-2,RRCK和MDCK透性试验验证模型的预测性能.
  • 除研究是为了评估单个MAT架构组件的贡献.
  • 分析数据预训练和结构优化对模型准确性的影响.

主要成果:

  • 对于各种透性预测,CPMP模型实现了高的确定系数 (R2):0.67 (PAMPA),0.75 (Caco-2),0.62 (RRCK) 和0.73 (MDCK).
  • 该模型的性能超过了传统的机器学习和基于图形的神经网络方法.
  • 废弃实验证实了MAT架构组件的有效性.

结论:

  • CPMP 模型提供了一个强大的,准确的 in silico 溶液,用于预测循环皮质膜的透性.
  • 这种工具可以通过减少对实验方法的依赖,显著加快药物发现和开发过程.