新生RNA的快速折叠调节了真核RNA生物发生的过程
Leonard Schärfen1, Isaac W Vock1, Matthew D Simon1
1Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520, USA.
Molecular cell
|March 26, 2025
概括
这项研究引入了协同转录结构跟踪 (CoSTseq),以揭示RNA在转录过程中如何折叠. 它表明RNA在聚合酶附近迅速形成结构,影响处理和功能.
科学领域:
- 分子生物学分子生物学
- 遗传学 是一个遗传学.
- 生物化学 生物化学
背景情况:
- RNA结构对其功能至关重要.
- 转录过程中的早期结构状态影响RNA处理和最终构造.
- 协同转录的RNA折叠在很大程度上仍然没有特征.
研究的目的:
- 开发和应用一种在体内转录期间跟踪RNA基配对的方法.
- 为了研究RNA结构形成的动态,因为它是合成的.
- 了解共转录折叠如何影响RNA处理和功能.
主要方法:
- 共同转录结构跟踪 (CoSTseq) 的开发.
- 在酵母中的RNA聚合酶 (Pols) 内和外的新生RNA基配对的检测.
- 在转录过程中对核酸配对活动的转录组范围的分析.
主要成果:
- CoSTseq揭示了新生链的25个基对中的快速RNA基配对.
- ~23%的rRNA核酸在Pol I附近达到最终结构;其他核酸在以后重新折叠.
- 新生的前mRNA采用类似于成熟mRNA的结构,表明转录后的重叠模仿了同转录的折叠.
结论:
- RNA结构的形成是一个动态的,共同转录的过程.
- 早期的结构状态显著影响RNA处理和成熟.
- 酶在核糖体生物发生过程中重塑RNA结构中起着关键作用.
相关概念视频
Ribosomal RNA Synthesis
13.0K
Ribosome synthesis is a highly complex and coordinated process involving more than 200 assembly factors. The synthesis and processing of ribosomal components occurs not only in the nucleolus but also in the nucleoplasm and the cytoplasm of eukaryotic cells.
Ribosome biogenesis begins with the synthesis of 5S and 45S pre-rRNAs by distinct RNA polymerases. The primary transcripts are extensively processed and modified before they are bound and folded by ribosomal proteins and assembly factors,...
Ribosome biogenesis begins with the synthesis of 5S and 45S pre-rRNAs by distinct RNA polymerases. The primary transcripts are extensively processed and modified before they are bound and folded by ribosomal proteins and assembly factors,...
13.0K
Chromatin Structure Regulates pre-mRNA Processing
6.9K
In eukaryotic cells, nascent mRNA transcripts need to undergo many post-transcriptional modifications to reach the cell cytoplasm and translate into functional proteins. For a long time, transcription and pre-mRNA processing were considered two independent events that occur sequentially in the cell. However, it has now been well established that transcription and pre-mRNA processing are two simultaneous processes that are precisely regulated inside the cell.
The chromatin structure, especially...
The chromatin structure, especially...
6.9K
Bacterial RNA Polymerase
28.2K
Unlike eukaryotes, bacteria use a single RNA Polymerase (RNAP) to transcribe all genes. The different subunits of bacterial RNAPhave distinct functions. The multisubunit structure of the bacterial RNAP helps the enzyme to maintain catalytic function, facilitate assembly, interact with DNA and RNA, and self-regulate its activity.
In most genes, the transcription site is a single base present upstream of the coding sequence. Though RNAP is a catalytically efficient enzyme, it does not recognize...
In most genes, the transcription site is a single base present upstream of the coding sequence. Though RNAP is a catalytically efficient enzyme, it does not recognize...
28.2K
Transcription Initiation
16.1K
Initiation is the first step of transcription in eukaryotes. Prokaryotic RNA Polymerase (RNAP) can bind to the template DNA and start transcribing. On the other hand, transcription in eukaryotes requires additional proteins, called transcription factors, to first bind to the promoter region in the DNA template. This binding helps recruit the specific RNAP that can assemble on the DNA and start transcription.
The promoters and enhancers and their accessory proteins allow tight regulation of...
The promoters and enhancers and their accessory proteins allow tight regulation of...
16.1K
Eukaryotic RNA Polymerases
23.1K
RNA Polymerase (RNAP) is conserved in all animals, with bacterial, archaeal, and eukaryotic RNAPs sharing significant sequence, structural, and functional similarities. Among the three eukaryotic RNAPs, RNA Polymerase II is most similar to bacterial RNAP in terms of both structural organization and folding topologies of the enzyme subunits. However, these similarities are not reflected in their mechanism of action.
All three eukaryotic RNAPs require specific transcription factors, of which the...
All three eukaryotic RNAPs require specific transcription factors, of which the...
23.1K
RNA Stability
33.1K
Intact DNA strands can be found in fossils, while scientists sometimes struggle to keep RNA intact under laboratory conditions. The structural variations between RNA and DNA underlie the differences in their stability and longevity. Because DNA is double-stranded, it is inherently more stable. The single-stranded structure of RNA is less stable but also more flexible and can form weak internal bonds. Additionally, most RNAs in the cell are relatively short, while DNA can be up to 250 million...
33.1K


