深度学习在发现抗病毒和模拟剂方面:数据库和预测工具
Maryam Nawaz1, Yao Huiyuan1, Fahad Akhtar1
1School of Life Science and Technology, China Pharmaceutical University, Nanjing, 211100, People's Republic of China.
Molecular diversity
|March 28, 2025
概括
抗病毒 (AVP) 为传统治疗提供了一个有前途的替代方案. 机器学习通过分析数据库和预测有效性来加速它们的发现,尽管临床使用仍然存在挑战.
科学领域:
- 生物化学 生化学
- 计算生物学 计算生物学
- 药物发现 药物发现 药物发现
背景情况:
- 抗病毒 (AVP) 正在成为针对寨卡病毒,埃博拉病毒和SARS-CoV-2等病毒感染的强有力的治疗方法.
- 人工智能 (AI) 和数据可用性的进步正在推动AVP研究的快速进展.
研究的目的:
- 本综述探讨了AVP数据库的发展,它们的物理化学特性,以及基于机器学习的预测工具,用于AVP发现.
- 它强调了人工智能在推动AVP和皮相仿药的发展中的作用.
主要方法:
- 专注于专门的AVP数据库 (DRAVP,AVPdb,DBAASP) 和它们在AVP表征中的实用性.
- 讨论机器学习和深度学习在AVP的计算预测中的应用.
- 分析物理化学特性 (疏水性,螺旋结构) 与抗病毒功效之间的联系.
主要成果:
- 机器学习显著帮助AVP发现,利用专门的数据库.
- 物理化学性质,如疏水性和两性结构,对于AVP功能至关重要.
- 目前的预测工具面临的挑战包括有限的数据,过度配备和缺乏机械洞察力.
结论:
- 未来的研究应该优先考虑强大的验证,体内数据的整合和可解释的AI模型.
- 将预测能力扩展到多目标相互作用和复杂的生物系统中,对于AVP的临床转化至关重要.
更多相关视频
09:34A Virtual Machine Platform for Non-Computer Professionals for Using Deep Learning to Classify Biological Sequences of Metagenomic Data
Published on: September 25, 2021
06:50Computational Prediction of Amino Acid Preferences of Potentially Multispecific Peptide-Binding Domains Involved in Protein-Protein Interactions
Published on: January 26, 2024
相关概念视频
Protein-protein Interfaces
Many proteins form complexes to carry out their functions, making protein-protein interactions (PPIs) essential for an organism's survival. Most PPIs are stabilized by numerous weak noncovalent chemical forces. The physical shape of the interfaces determines the way two proteins interact. Many globular proteins have closely-matching shapes on their surfaces, which form a large number of weak bonds. Additionally, many PPIs occur between two helices or between a surface cleft and a polypeptide...
Human Virome
The human body harbors a vast and diverse viral community known as the human virome. The virome includes bacteriophages that infect bacteria, and eukaryotic viruses that infect human cells. Transient dietary and environmental viruses also contribute to this dynamic ecosystem. Estimates suggest the human body may contain on the order of 10¹³ viral particles, though abundance varies widely by body site and detection method.Comprehensive characterization of the virome has become possible only with...
