便衍生的细菌群落的组装遵循"早期鸟类"的资源利用动态
Andrés Aranda-Díaz1, Lisa Willis1, Taylor H Nguyen1
1Department of Bioengineering, Stanford University, Stanford, CA 94305, USA.
Cell systems
|March 29, 2025
概括
饮食营养素显著影响肠道微生物群的组成. 这项研究开发了一种预测模型,显示补充碳来源决定了微生物的相对丰度,为操纵肠道健康提供了洞察力.
科学领域:
- 微生物学 微生物学
- 营养科学 营养科学
- 系统生物学 系统生物学
背景情况:
- 饮食通过肠道微生物群组成显著影响宿主健康.
- 营养物质的可用性和微生物群落结构之间的机制联系尚不清楚.
研究的目的:
- 基于营养素的可用性,开发肠道微生物社区组成的预测模型.
- 了解营养干扰如何影响微生物的丰度和相互作用.
主要方法:
- 从人类便中培养出成千上万的体外微生物群落.
- 从中央碳代谢中添加单个营养物质到复杂的介质中.
- 开发了一个预测模型,将营养来源与社区组成联系起来.
主要成果:
- 微生物社区的成员资格主要由便捐赠者决定.
- 微生物种类的相对丰度是由补充碳来源决定的.
- 绝对丰度在很大程度上独立于营养,这是由于主导物种的利基断.
- 主导类型的丰度与体外生长动态和营养偏好相关.
结论:
- 肠道微生物社区的组合可以通过营养利用动态来解释.
- 营养干扰为操纵肠道共生社区提供了一个预测框架.
- 了解营养素与微生物群的相互作用是针对性肠道健康干预的关键.
相关概念视频
Deep Sea Microbial Ecology
The deep ocean and its underlying sediments represent vast, largely unexplored microbial habitats that extend far beyond the sunlit photic zone. The photic (euphotic) zone typically spans the upper ~100–200 meters of pelagic waters in the open ocean, but its depth varies geographically and seasonally, where sufficient light supports photosynthetic life. Below this lies the deep sea, spanning roughly 1000–6000 meters (bathypelagic to abyssal zones), with deeper hadal trenches extending beyond...
Development of Human Microbiota
The human microbiota begins developing at birth and undergoes continual change as we age. Infancy marks a critical period of microbial sensitivity, offering a “window of opportunity” during which beneficial microbes help mature the immune system. By age three, children typically develop a more stable and diverse microbial community. Newborns acquire microbes from their immediate environment; vaginal delivery favors maternal vaginal microbes, while cesarean births favor microbes from the skin...
Development of the Oral Microbiota
The establishment of the oral microbiome begins before birth, challenging the long-held belief that the fetal oral cavity is sterile. The presence of oral microbes such as Streptococcus and Fusobacterium in amniotic fluid suggests that microbial exposure may occur in utero, potentially through translocation from the maternal oral or gastrointestinal tract. This early colonization primes the neonatal immune system and sets the stage for subsequent microbial succession. Maternal health,...
Microbiota of the Stomach and Small Intestine
The human gastrointestinal (GI) tract is characterized by distinct physicochemical conditions that shape its microbial communities. Among these, the stomach presents a particularly challenging environment for microbial colonization due to its highly acidic pH, ranging from 1 to 3. This extreme acidity effectively limits microbial density. However, certain acid-tolerant microorganisms are capable of surviving in this niche. Notably, Helicobacter pylori can colonize the gastric mucosa,...
Microbiota of the Large Intestine
The large intestine hosts the most densely populated microbial ecosystem in the human body. This complex community primarily consists of anaerobic bacteria, with Bacillota (formerly Firmicutes) and Bacteroidota (formerly Bacteroidetes) as the predominant groups. The distribution of these microbes varies along different sections of the large intestine, influenced by local environmental factors such as oxygen availability and nutrient composition.The cecum, located at the beginning of the large...


