通过SWI/SNF复合体介导的ZNF410合作结合维持了染色质的可访问性和增强剂活性
Siyuan Xu1, Chuxuan Peng1, Ren Ren2
1Department of Systems Biology for Medicine, School of Basic Medical Sciences, Department of Liver Surgery and Transplantation, Liver Cancer Institute, Zhongshan Hospital, Fudan University, Shanghai 200032, China.
Cell reports
|March 30, 2025
概括
转录因子结合位点 (TFBS) 的同型集群控制基因表达. 通过调节染色质可访问性,ZNF410结合CHD4增强剂上的聚类位点细调基因活性.
科学领域:
- 基因组学就是基因组学.
- 分子生物学分子生物学
- 表观遗传学 在表观遗传学中,表观遗传学是指表观遗传学.
背景情况:
- 转录因子结合部位 (TFBS) 经常聚集在真核基因组中.
- 同型TFBS集群 (HCTs) 在基因调节中的作用尚未完全理解.
研究的目的:
- 研究ZNF410 HCTs在调节CHD4增强剂中的功能.
- 阐明ZNF410 HCTs控制基因表达的机制.
主要方法:
- 在CHD4增强剂中对ZNF410 HCT进行全基因组的表征.
- 测试用于评估ZNF410结合,染色素可访问性和增强剂活性.
- 调查SWI/SNF复合体在ZNF410介导调节中的作用.
主要成果:
- 在CHD4增强剂中发现了ZNF410 HCT.
- 结合HCT的ZNF410具有协作性,并激活转录.
- 特定的ZNF410图案充当控制染色质可访问性和增强剂活性的开关.
- SWI/SNF复合体对于合作性ZNF410结合和CHD4表达是必不可少的.
结论:
- 同型的集群图案表现出复杂的功能层次结构.
- ZNF410与HCT的合作结合微调了目标基因表达.
- ZNF410在通过集群结合部位调节CHD4表达方面发挥着关键作用.
相关概念视频
Cooperative Binding of Transcription Regulators
7.4K
Transcriptional regulators bind to specific cis-regulatory sequences in the DNA to regulate gene transcription. These cis-regulatory sequences are very short, usually less than ten nucleotide pairs in length. The short length means that there is a high probability of the exact same sequence randomly occurring throughout the genome. Since regulators can also bind to groups of similar sequences, this further increases the chances of random binding. Transcriptional regulators form...
7.4K
Cooperative Binding of Transcription Regulators
2.6K
No description available
2.6K
Cooperative Allosteric Transitions
8.9K
Cooperative allosteric transitions can occur in multimeric proteins, where each subunit of the protein has its own ligand-binding site. When a ligand binds to any of these subunits, it triggers a conformational change that affects the binding sites in the other subunits; this can change the affinity of the other sites for their respective ligands. The ability of the protein to change the shape of its binding site is attributed to the presence of a mix of flexible and stable segments in the...
8.9K
Cooperative Allosteric Transitions
3.1K
No description available
3.1K
Spreading of Chromatin Modifications
9.5K
The histone proteins in the nucleosomes are post-translationally modified (PTM) to increase or decrease access to DNA. The commonly observed PTMs are methylation, acetylation, phosphorylation, and ubiquitination of lysine amino acids in the histone H3 tail region. These histone modifications have specific meaning for the cell. Hence, they are called "histone code". The protein complex involved in histone modification is termed as "reader-writer" complex.
Writers
The writer...
Writers
The writer...
9.5K
Chromatin Packaging
22.4K
Each human somatic cell contains 6 billion base-pairs of DNA. Each base-pair is 0.34 nm long, which means that each diploid cell contains a staggering 2 meters of DNA. How is such a long DNA strand packed inside a nucleus measuring only 10 - 20 microns in diameter?
The chromatin
In combination with specialized DNA binding protein called Histones, the DNA double helix forms a compact DNA: protein complex called chromatin. The chromatin itself is further compacted into higher-order...
The chromatin
In combination with specialized DNA binding protein called Histones, the DNA double helix forms a compact DNA: protein complex called chromatin. The chromatin itself is further compacted into higher-order...
22.4K


