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Protein Networks02:26

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In the secretory pathway, vesicles transport proteins from one cellular compartment to another in forward transport to deliver the protein to its correct location. Occasionally, misfolded proteins and incorrect proteins escape their original compartments, and a retrieval pathway is used to return the escaped proteins to their original compartment.
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Genomics is the science of genomes: it is the study of all the genetic material of an organism. In humans, the genome consists of information carried in 23 pairs of chromosomes in the nucleus, as well as mitochondrial DNA. In genomics, both coding and non-coding DNA is sequenced and analyzed. Genomics allows a better understanding of all living things, their evolution, and their diversity. It has a myriad of uses: for example, to build phylogenetic trees, to improve productivity and...
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Proteins are dynamic macromolecules that carry out a wide variety of essential processes; however, the activities of most proteins depend on their interactions with other molecules or ions, known as ligands.
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Allosteric proteins have more than one ligand binding site; the binding of a ligand to any of these sites influences the binding of ligands to the other sites. When a protein is allosteric, its binding sites are called coupled or linked.  In the case of enzymes, the site that binds to the substrate is known as the active site and the other site is known as the regulatory site. When a ligand binds to the regulatory site, this leads to conformational changes in the protein that can influence...
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Updated: May 17, 2025

A Knowledge Graph Approach to Elucidate the Role of Organellar Pathways in Disease via Biomedical Reports
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PloverDB:一个高性能平台,用于将生物医学知识图表作为符合标准的Web API.

Amy K Glen1, Eric W Deutsch2, Stephen A Ramsey1,3

  • 1School of Electrical Engineering and Computer Science, Oregon State University, Corvallis, Oregon, USA.

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概括

PloverDB为生物医学知识图提供了一个专门的平台,简化了数据集成和可访问性. 它确保标准的合规性和有效的查询,增强研究人员的数据实用性.

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科学领域:

  • 生物医学信息学 生物医学信息学
  • 数据科学数据科学数据科学
  • 知识表示 知识表示

背景情况:

  • 知识图对于整合各种生物医学数据至关重要.
  • 一般图形数据库缺乏生物医学标准的合规性和推理能力.
  • 互操作性需要遵守诸如生物医学数据翻译商联盟的标准.

研究的目的:

  • 介绍PloverDB,一个用于托管和提供生物医学知识图的软件平台.
  • 为生物医学知识图提供符合标准的Web API.
  • 为生物医学数据提供商简化数据的可访问性和实用性.

主要方法:

  • 开发了PloverDB作为一个全面的软件平台.
  • 集成后端知识推理,实体解决方案和元数据曝光.
  • 为高效的查询答复和易于部署而设计.
  • 确保标准化元数据和测试数据的自动处理.

主要成果:

  • PloverDB有效地将生物医学知识图表作为符合标准的Web API.
  • 该平台自动化了实体解决方案和元数据曝光.
  • 它简化了知识图的部署和多重化.
  • 对于数据提供商来说,PloverDB提高了数据的可访问性和实用性.

结论:

  • PloverDB是一个专门的平台,它解决了生物医学知识的通用图形数据库的局限性.
  • 它有助于标准合规,并通过Web API提供高效的数据.
  • 该平台使数据提供商能够使他们的知识图表更容易获得和更有用.