XPRS:一种可解释和解释多基因风险评分的工具
1Graduate School of Data Science, Seoul National University, 1 Gwanak-ro, Seoul, 08826, South Korea.
Bioinformatics (Oxford, England)
|March 31, 2025
概括
可解释的PRS (XPRS) 通过分解遗传贡献来提高多基因风险评分 (PRS) 的解释性. 这种工具有助于临床医生和患者了解对疾病的遗传易感性.
科学领域:
- 基因组学就是基因组学.
- 生物信息学是一种生物信息学.
- 计算生物学 计算生物学
背景情况:
- 多基因风险评分 (PRS) 对于评估对疾病的遗传易感性至关重要.
- 由于缺乏可解释性工具,PRS的临床应用受到阻碍.
研究的目的:
- 介绍 eXplainable PRS (XPRS),这是一个用于PRS解释和可视化的新工具.
- 通过提供对基因和单核酸多态 (SNP) 贡献的洞察,提高PRS的临床实用性.
主要方法:
- XPRS使用沙普利增量解释 (SHAPs) 来将PRS分解为基因/区域和SNP贡献得分.
- 使用多层次可视化,包括曼哈顿地图,LocusZoom类地图和表格.
- 具有用户友好的Web界面,用于简单的数据输入和解释.
主要成果:
- XPRS提供了对特定基因和SNP的洞察力,这些基因和SNP对个体的PRS有显著的贡献.
- 多层次可视化突出显示了人口和个人层面的重要遗传贡献者.
- 该工具有助于理解复杂的遗传数据,从而获得可操作的临床见解.
结论:
- XPRS弥合了复杂的遗传数据和临床可操作性之间的差距.
- 该软件改善了临床医生和患者之间关于遗传疾病风险的沟通.
- XPRS提高了多基因风险评分的解释性和临床实用性.
更多相关视频
09:37Navigating MARRVEL, a Web-Based Tool that Integrates Human Genomics and Model Organism Genetics Information
Published on: August 15, 2019
9.6K
12:22The Use of Reverse Phase Protein Arrays RPPA to Explore Protein Expression Variation within Individual Renal Cell Cancers
Published on: January 22, 2013
33.5K
相关概念视频
Polygenic Traits
64.4K
When more than one gene is responsible for a given phenotype, the trait is considered polygenic. Human height is a polygenic trait. Studies have uncovered hundreds of loci that influence height, and there are believed to be many more. Due to the high number of genes involved, as well as environmental and nutritional factors, height varies significantly within a given population. The distribution of height forms a bell-shaped curve, with relatively few individuals in the population at the...
64.4K
Receiver Operating Characteristic Plot
67
A ROC (Receiver Operating Characteristic) plot is a graphical tool used to assess the performance of a binary classification model by illustrating the trade-off between sensitivity (true positive rate) and specificity (false positive rate). By plotting sensitivity against 1 - specificity across various threshold settings, the ROC curve shows how well the model distinguishes between classes, with a curve closer to the top-left corner indicating a more accurate model. The area under the ROC curve...
67
Genome-wide Association Studies-GWAS
12.2K
Genome-wide association studies or GWAS are used to identify whether common SNPs are associated with certain diseases. Suppose specific SNPs are more frequently observed in individuals with a particular disease than those without the disease. In that case, those SNPs are said to be associated with the disease. Chi-square analysis is performed to check the probability of the allele likely to be associated with the disease.
GWAS does not require the identification of the target gene involved in...
GWAS does not require the identification of the target gene involved in...
12.2K
Sensitivity, Specificity, and Predicted Value
149
In healthcare diagnostics, laboratory tests play a crucial role in identifying and diagnosing a wide range of medical conditions. However, interpreting test results is not always straightforward. An abnormal test result does not always confirm the presence of a disease, just as a normal result does not guarantee its absence. To assess the reliability of these diagnostic tools, healthcare practitioners rely on two key statistical indicators: sensitivity and specificity.
Sensitivity is the...
Sensitivity is the...
149
Types of Biopharmaceutical Studies: Controlled and Non-Controlled Approaches
106
Biopharmaceutical studies constitute a vital field aiming to enhance drug delivery methods and refine therapeutic approaches, drawing upon diverse interdisciplinary knowledge. In research methodologies, the choice between controlled and non-controlled studies significantly influences the study's reliability and accuracy.
Non-controlled studies, commonly employed for initial exploration, lack a control group, rendering them susceptible to biases and external influences. In contrast,...
Non-controlled studies, commonly employed for initial exploration, lack a control group, rendering them susceptible to biases and external influences. In contrast,...
106
Relative Risk
98
Relative risk (RR) is a statistical measure commonly used in epidemiology to compare the likelihood of a particular event occurring between two groups. This metric is important for evaluating the relationship between exposure to a specific risk factor and the probability of a particular outcome. It plays a crucial role in medical research, public health studies, and risk assessment. Relative risk quantifies how much more (or less) likely an event is to occur in an exposed group compared to an...
98
