从患病的蔓越中分离出的Diaporthe vaccinii的基因组序列草案
Bhagya C Thimmappa1, Matt Sarrasin1, B Franz Lang1
1Department of Biochemistry, Robert-Cedergren Center for Bioinformatics and Genomics, Université de Montréal, Montreal, Québec, Canada.
Microbiology resource announcements
|April 2, 2025
概括
研究人员组装和注释了病原性真菌Diaporthe vaccinii的核基因组,这种真菌在患病的蔓越上发现. 这些基因组数据为了解蔓越植物疾病和真菌病原体提供了基础.
科学领域:
- 菌类学 菌类学是指菌类学.
- 植物病理学 植物病理学
- 基因组学就是基因组学.
背景情况:
- 疫苗是影响蔓越作物的真菌病原体.
- 了解植物病原体的遗传组成对于疾病管理至关重要.
研究的目的:
- 为了组装和注释Diaporthe vaccinii的核基因组.
- 为研究蔓越疾病提供基因组资源.
主要方法:
- 使用Illumina配对技术进行全基因组测序.
- 核基因组的生物信息组装和注释.
- 通过使用BUSCO (基准测量通用单拷贝正义学家) 评估基因组完整性.
主要成果:
- 迪亚波特疫苗基因组被组装成67Mbp的588个连接.
- 该组件实现了N50值的386Kbp.
- 基因组完整性根据BUSCO分析确定为97.5%.
结论:
- 成功组装和注释Diaporthe vaccinii核基因组是一个重要的进步.
- 这种基因组资源将促进未来对这种重要的蔓越病原体的致病性和演变的研究.
关键词:
在 Diaporthe vaccinii 中显示了疫苗.疫苗 (Vaccinium macrocarpon) 是一种植物.水果腐烂病原体的病原体核基因组是一个核基因组.植物病原体和植物病原体.更多相关视频
10:28Ultralow Input Genome Sequencing Library Preparation from a Single Tardigrade Specimen
Published on: July 15, 2018
8.7K
12:08Hybrid De Novo Genome Assembly for the Generation of Complete Genomes of Urinary Bacteria using Short- and Long-read Sequencing Technologies
Published on: August 20, 2021
4.9K
相关概念视频
Genome Annotation and Assembly
18.7K
The genome refers to all of the genetic material in an organism. It can range from a few million base pairs in microbial cells to several billion base pairs in many eukaryotic organisms. Genome assembly refers to the process of taking the DNA sequencing data and putting it all back together in a correct order to create a close representation of the original genome. This is followed by the identification of functional elements on the newly assembled genome, a process called genome annotation.
18.7K
Genomics
35.3K
Genomics is the science of genomes: it is the study of all the genetic material of an organism. In humans, the genome consists of information carried in 23 pairs of chromosomes in the nucleus, as well as mitochondrial DNA. In genomics, both coding and non-coding DNA is sequenced and analyzed. Genomics allows a better understanding of all living things, their evolution, and their diversity. It has a myriad of uses: for example, to build phylogenetic trees, to improve productivity and...
35.3K
Sanger Sequencing
751.5K
DNA sequencing is a fundamental technique that is routinely used in the biological sciences. This method can be applied to a range of questions at different scales - from the sequencing of a cloned DNA fragment or the study of a mutation in a gene up to whole-genome sequencing. However, despite the widespread use of sequencing today, it was not until 1977 that Fredrick Sanger and his collaborators developed the chain-termination method to decode DNA sequences. It relies on the separation of a...
751.5K
Maxam-Gilbert Sequencing
10.6K
In the same year as the discovery of the Sanger sequencing method, another group of scientists, Allan Maxam and Walter Gilbert, demonstrated their chemical-cleavage method for DNA sequencing. The Maxam-Gilbert method relies on using different chemicals that can cleave the DNA sequence at specific sites, the separation of resulting DNA fragments of variable size using electrophoresis, and deciphering the DNA sequence from the resulting gel bands.
Challenges of the Maxam-Gilbert Method
The...
Challenges of the Maxam-Gilbert Method
The...
10.6K
Next-generation Sequencing
86.3K
The first human genome sequencing project cost $2.7 billion and was declared complete in 2003, after 15 years of international cooperation and collaboration between several research teams and funding agencies. Today, with the advent of next-generation sequencing technologies, the cost and time of sequencing a human genome have dropped over 100 fold.
Next-Generation Sequencing Methods
Although all next-generation methods use different technologies, they all share a set of standard features....
Next-Generation Sequencing Methods
Although all next-generation methods use different technologies, they all share a set of standard features....
86.3K
Genome Size and the Evolution of New Genes
2.4K
2.4K
