基于分子和结构的药物设计:从理论到实践
Manasvi Saini1, Nisha Mehra2, Gaurav Kumar3
1College of Pharmacy, Shivalik Campus, Dehradun, Uttrakhand, India.
Advances in pharmacology (San Diego, Calif.)
|April 2, 2025
概括
基于结构的药物设计 (SBDD) 和分子对接加速了药物发现. 这些方法使用结构数据和计算模拟来识别和优化潜在的治疗剂,提高药物的疗效和选择性.
科学领域:
- 生物化学 生物化学
- 计算化学计算化学
- 药理学 药理学是指药理学的学科.
背景情况:
- 基于结构的药物设计 (SBDD) 和分子对接是现代药物发现的关键.
- 来自NMR,冷EM和X射线晶体学等技术的高分辨率结构数据对于SBDD至关重要.
研究的目的:
- 审查SBDD和分子对接的原则和方法.
- 突出分子对接的进步,包括机器学习集成.
- 讨论这些领域的挑战和未来方向.
主要方法:
- 在SBDD中使用生物标的高分辨率结构数据.
- 采用分子对接模拟来预测配体-受体相互作用.
- 整合机器学习来提高对接精度和评分功能.
主要成果:
- 通过SBDD,可以设计具有提高选择性和疗效的药物.
- 分子对接预测了连接体结合方向和相互作用强度.
- 进步解决了预测准确性,蛋白质灵活性和溶解效应的局限性.
结论:
- SBDD和分子对接是识别和优化治疗剂的必不可少的工具.
- 持续的创新和跨学科的合作对于推动药物发现中的分子对接至关重要.
- 这些计算方法在很大程度上有助于开发新疗法.
相关概念视频
Structure-Activity Relationships and Drug Design
467
Drug design is a dynamic field that involves discovering and developing new medications based on specific biological targets. This process heavily relies on structure-activity relationships (SAR) and quantitative structure-activity relationships (QSAR) to guide the design and optimization of efficient drugs.
SAR studies the intricate relationship between a drug's chemical structure and biological activity. It focuses on understanding how modifications to a drug's structure can influence...
SAR studies the intricate relationship between a drug's chemical structure and biological activity. It focuses on understanding how modifications to a drug's structure can influence...
467
Drug Discovery: Overview
7.2K
Drug discovery is a multifaceted process involving extensive screening, testing, and optimization of lead compounds to identify potential new drugs for therapeutic use. It combines several approaches, including screening large numbers of natural products, chemical modification of known active molecules, identification of new drug targets, and rational design based on biological mechanisms and drug-receptor structure. These approaches are carried out in both academic research laboratories and...
7.2K
Ligand Binding Sites
12.6K
Proteins are dynamic macromolecules that carry out a wide variety of essential processes; however, the activities of most proteins depend on their interactions with other molecules or ions, known as ligands.
Protein-ligand interactions are quite specific; even though numerous potential ligands surround a cellular protein at any given time, only a particular ligand can bind to that protein. Moreover, a ligand binds only to a dedicated area on the surface of the protein, known as the...
Protein-ligand interactions are quite specific; even though numerous potential ligands surround a cellular protein at any given time, only a particular ligand can bind to that protein. Moreover, a ligand binds only to a dedicated area on the surface of the protein, known as the...
12.6K
Drug-Receptor Bonds
2.6K
Drug-receptor bonds are formed through various chemical forces when drugs interact with target cells. Covalent bonds, strong and irreversible, are exemplified by DNA-alkylating anticancer agents that inhibit cell division. However, such irreversible drug binding lacks selectivity and can modify the DNA of the surrounding healthy cells. Covalent binding often contributes to tissue toxicity, as seen with chloroform and paracetamol metabolites binding to the liver, causing hepatotoxicity.
In...
In...
2.6K
Molecular Models
37.6K
Physical models representing molecular architectures of chemical compounds play essential roles in understanding chemistry. The use of molecular models makes it easier to visualize the structures and shapes of atoms and molecules.
37.6K
Pharmacodynamics: Overview and Principles
915
Pharmacodynamics is a scientific field that delves into drugs' intricate biochemical, cellular, and physiological effects on the human body. The study of pharmacodynamics helps us understand how drugs interact with the body and elicit various responses.
Most drugs' effects result from their interactions with drug receptors or targets within the body. These interactions trigger specific responses at the cellular or systemic level. Drug receptors can be found on the surfaces of cells or...
Most drugs' effects result from their interactions with drug receptors or targets within the body. These interactions trigger specific responses at the cellular or systemic level. Drug receptors can be found on the surfaces of cells or...
915


