分子对接-QSAR-Kronecker-规范化基于最小平方的多重机器学习,用于评估和预测PFAS与蛋白质结合相互作用
Lihui Zhao1, Zixuan Zhang2, Hailei Su2
1State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, China; College of geoexploration science and technology, Jilin University, Changchun 130026, China.
这项研究使用计算建模来预测和多基物质 (PFAS) 如何与人体蛋白质结合,有助于理解它们的健康风险和管理环境污染.
科学领域:
- 环境化学环境化学
- 毒理学 毒理学 毒理学
- 计算化学计算化学
背景情况:
- 和多醇基物质 (PFAS) 是广泛存在的环境污染物,具有已知的人类健康风险.
- 了解PFAS-蛋白相互作用对于阐明它们的毒理机制至关重要.
- 体方法提供了一种具有成本效益的方法来评估这些相互作用.
研究的目的:
- 通过计算预测430 PFAS与关键人体蛋白质的结合亲和关系:人体血清白蛋白 (HSA),过氧酶增殖器激活受体玛 (PPARγ) 和胺素 (TTR).
- 为了确定影响PFAS与蛋白质结合的关键分子特征.
- 开发一种预测模型,用于PFAS与一种新的标结合,G蛋白结合受体40 (GPR40).
主要方法:
- 用分子对接模拟来评估结合亲缘关系.
- 使用了分析层次过程,模糊综合评估和定量结构-活动关系 (QSAR) 模型.
- 定义了PFAS的主要特征 (电荷,能量,形状):PEOE_RPC-,E_vdw,MNDO_LUMO,以及vsurf.
- 克罗尼克调节最小方程 (Kron-RLS) 模型被应用于预测.
主要成果:
- 该研究成功地预测了许多PFAS-蛋白相互作用的结合 afinities.
- 与电荷,能量和形状相关的关键分子描述符被确定为结合的关键.
- 克隆-RLS模型显示了PFAS-GPR40结合的高预测精度 (R2=0.94).
结论:
- 计算模拟是评估PFAS毒性和帮助科学管理的有效工具.
- 开发的模型可以预测PFAS与各种蛋白质标的结合,包括像GPR40.0这样的新型蛋白质.
- 这种方法可以扩展到研究其他环境污染物及其对健康的影响.
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