脊椎动物CPEB蛋白家族中低复杂度区域的不同演变
Serena Vaglietti1, Stefania Boggio Bozzo1, Mirella Ghirardi1
1"Rita Levi-Montalcini" Department of Neuroscience, University of Turin, Turin, Italy.
Frontiers in bioinformatics
|April 4, 2025
概括
细胞质多化元素结合蛋白 (CPEBs) 的进化在脊椎动物进化过程中显示出它们的低复杂性区域 (LCRs) 的不同趋势. 这些变化,特别是CPEB2的变化,与蛋白质功能和类年龄相关.
科学领域:
- 进化生物学 进化生物学
- 分子生物学分子生物学
- 遗传学 遗传学是一种遗传学.
背景情况:
- 细胞质多基化元素结合蛋白 (CPEBs) 调节翻译,对突触可塑性至关重要.
- 脊椎动物的CPEBs (CPEB1-4) 具有保留的RNA结合域和可变的N终端区域 (NTRs),其中包含低复杂度区域 (LCRs) 和氨基酸重复 (AARs).
- 这些LCR/AAR调解液体-液体相分离 (LLPS) 和类聚合,影响蛋白质功能.
研究的目的:
- 研究脊椎动物CPEB及其LCR/AAR的进化史.
- 分析LCR/AAR的组成,复杂性和重复性,以及它们对LLPS和类属性的影响.
- 为了了解paralog特定的NTR如何为功能多样化做出贡献.
主要方法:
- 定义了人类CPEB对应物中LCR/AAR组成和功能的定量参数.
- 系统地分析了这些参数在500多种脊椎动物物种的进化变异.
- 专注于序列组成,复杂性,重复性和LLPS/prion-like倾向.
主要成果:
- 这四个CPEB类比在LCR/AAR组合和功能方面表现出不同的,类比特异的进化轨迹.
- 进化趋势在很大程度上受到类茎年龄的影响.
- CPEB2在年轻的脊椎动物,包括灵长类动物中显著出现,作为一种富含proline的,类似 prion的蛋白质.
结论:
- 脊椎动物的CPEB进化表现为LCR/AAR的不同趋势,影响LLPS和类似子的特征.
- 在CPEB的功能多样化中,Paralog特定的NTR进化发挥了关键作用.
- 这些发现提供了关于LCRs在CPEB家族中的分子和功能演变的见解.
相关概念视频
Cis-regulatory Sequences
9.6K
Cis-regulatory sequences are short fragments of non-coding DNA that are present on the same chromosomes as the genes that they regulate. These fragments serve as binding sites for transcriptional regulators, proteins that are responsible for controlling gene transcription and differential gene expression across cell types in eukaryotes. Cis-regulatory sequences can be close to the gene of interest or thousands of bases away in the DNA sequence; however, those sequences that are further away are...
9.6K
Gene Duplication and Divergence
6.0K
The seminal work of Ohno in 1970 popularized the idea of gene duplication and divergence. DNA sequence comparison studies reveal that a large portion of the genes in bacteria, archaebacteria, and eukaryotes was generated by gene duplication and divergence, indicating its critical role in evolution.
The duplicated copies of the gene are called Paralogs. Paralogs with similar sequences and functions form a gene family. Across several species, a large number of gene families are...
The duplicated copies of the gene are called Paralogs. Paralogs with similar sequences and functions form a gene family. Across several species, a large number of gene families are...
6.0K
Convergent Evolution
27.2K
Evolution shapes the features of organisms over time, ensuring that they are suited for the environments in which they live. Sometimes, selection pressure leads to the rise of similar but unrelated adaptations in organisms with no recent common ancestors, a process known as convergent evolution.
27.2K
Gene Evolution - Fast or Slow?
7.0K
The genomes of eukaryotes are punctuated by long stretches of sequence which do not code for proteins or RNAs. Although some of these regions do contain crucial regulatory sequences, the vast majority of this DNA serves no known function. Typically, these regions of the genome are the ones in which the fastest change, in evolutionary terms, is observed, because there is typically little to no selection pressure acting on these regions to preserve their sequences.
In contrast, regions which code...
In contrast, regions which code...
7.0K
Multi-species Conserved Sequences
3.9K
Next-generation sequencing technologies have created large genomic databases of a variety of animals and plants. Ever since the human genome project was completed, scientists studied the genome of primates, mammals, and other phylogenetically distant living beings. Such large-scale studies have provided new insights into the evolutionary relationship between organisms.
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved...
Although the genome of each species varies greatly from each other, a few sequences are highly conserved. Such conserved...
3.9K
Protein Complexes with Interchangeable Parts
2.5K
Groups of proteins may form a complex where each protein in this complex has a different role in the overall execution of the complex’s function. Often some of the proteins in the complex can be replaced by a closely related variant to give a complex that contains many of the same components yet is functionally distinct.
The SCF ubiquitin ligase is a protein complex of five individual proteins. This complex attaches ubiquitin to other target proteins to mark them for degradation. In order...
The SCF ubiquitin ligase is a protein complex of five individual proteins. This complex attaches ubiquitin to other target proteins to mark them for degradation. In order...
2.5K


