转录突破和mRNA生产如何影响细胞解析现象的精确时间
Zhuoyan Lyu1, Anupam Mondal1,2, Anatoly B Kolomeisky1,2,3,4
1Department of Chemistry, Rice University, Houston, Texas 77005, United States.
The journal of physical chemistry. B
|April 7, 2025
概括
细菌细胞溶解的时间是稳定的,即使随机基因表达. 新的模型显示,转录突破和mRNA生产会影响溶解值,但不会影响精确的时间机制.
科学领域:
- 微生物学 微生物学
- 分子生物学分子生物学
- 理论生物学 理论生物学
背景情况:
- 细菌病毒诱导霍林蛋白的产生,导致细胞膜透和溶解.
- 细菌细胞溶解的精确时间被观察到,但潜在的分子机制仍然不清楚.
- 现有的模型通过holin积累和膜破裂来解释溶解时间,但缺乏生物现实性.
研究的目的:
- 研究转录突破和mRNA产生对细菌细胞溶解动态的影响.
- 扩展现有的细胞解离的随机框架,以纳入现实的生物过程.
- 阐明细菌细胞溶解精确时间的机械方面.
主要方法:
- 开发了一个扩展的细胞解离的随机理论框架.
- 将转录突破和mRNA生产纳入模型.
- 执行分析计算和蒙特卡洛计算机模拟.
主要成果:
- 转录突破和mRNA的产生不会改变细胞溶解的值动态.
- 这些随机过程会影响最大值及其分布.
- 对于溶解动力学,mRNA的产生通常比转录突破对溶解动力学有更强烈的影响.
结论:
- 精确的细胞溶解时间是一个强大的现象,适应随机的生化过程.
- 扩展的理论模型阐明了细菌细胞溶解的机制方面.
- 该研究为观察到的溶解动态提供了物理化学解释.
相关概念视频
mRNA Stability and Gene Expression
5.5K
The structure and stability of mRNA molecules regulates gene expression, as mRNAs are a key step in the pathway from gene to protein. In eukaryotes, the half-life of mRNA varies from a few minutes up to several days. mRNA stability is essential in growth and development. The absence of the proteins regulating its stability, such as tristetraprolin in mice, can cause systemic issues, including bone marrow overgrowth, inflammation, and autoimmunity.
Cis-acting Elements involved in mRNA stability
Cis-acting Elements involved in mRNA stability
5.5K
Chromatin Structure Regulates pre-mRNA Processing
6.9K
In eukaryotic cells, nascent mRNA transcripts need to undergo many post-transcriptional modifications to reach the cell cytoplasm and translate into functional proteins. For a long time, transcription and pre-mRNA processing were considered two independent events that occur sequentially in the cell. However, it has now been well established that transcription and pre-mRNA processing are two simultaneous processes that are precisely regulated inside the cell.
The chromatin structure, especially...
The chromatin structure, especially...
6.9K
Regulation of Expression at Multiple Steps
849
The gene expression in cells is regulated at different stages: (i) transcription, (ii) RNA processing, (iii) RNA localization, and (iv) translation. Transcriptional regulation is mediated by regulatory proteins such as transcription factors, activators, or repressors—these control gene expression by initiating or inhibiting the transcription of genes. Once a precursor or pre-mRNA is produced, it undergoes post-transcriptional modification, including 5' capping, splicing, and the...
849
Regulation of Expression Occurs at Multiple Steps
22.0K
Gene expression can be regulated at almost every step from gene to protein. Transcription is the step that is most commonly regulated. This involves the binding of proteins to short regulatory sequences on the DNA. This association can either promote or inhibit the transcription of a gene associated with the respective sequence.
Transcription results in the generation of precursor (pre-mRNA) that consists of both exons and introns, which needs further processing before being translated to a...
Transcription results in the generation of precursor (pre-mRNA) that consists of both exons and introns, which needs further processing before being translated to a...
22.0K
Nuclear Export of mRNA
7.5K
Before mRNAs are exported to the cytoplasm, it is crucial to check each mRNA for structural and functional integrity. Eukaryotic cells use several different mechanisms, collectively known as mRNA surveillance, to look for irregularities in mRNAs. Irregular or aberrant mRNA are rapidly degraded by various enzymes. If a defective mRNA escapes the surveillance, it would be translated into a protein which would either be non-functional or not function properly. One of the primary irregularities in...
7.5K
Transcription Attenuation in Prokaryotes
15.0K
Transcriptional attenuation occurs when RNA transcription is prematurely terminated due to the formation of a terminator mRNA hairpin structure. Bacteria use these hairpins to regulate the transcription process and control the synthesis of several amino acids including histidine, lysine, threonine, and phenylalanine. Transcription attenuation takes place in the non-coding regions of mRNA.
There are several different mechanisms used to attenuate transcription. In ribosome mediated...
There are several different mechanisms used to attenuate transcription. In ribosome mediated...
15.0K


