溶解增强了折叠协作性和折叠速率的拓依赖性,在一个晶格蛋白模型中
Nhung T T Nguyen1,2, Pham Nam Phong3, Duy Manh Le4,5
1Graduate University of Science and Technology, Vietnamese Academy of Science and Technology, 18 Hoang Quoc Viet, Nghia Do, Cau Giay, Hanoi 11307, Vietnam.
The Journal of chemical physics
|April 8, 2025
概括
有利的溶解增强了蛋白质折叠合作性,并改善了折叠率预测. 这表明溶剂相互作用,特别是与基的相互作用,对于蛋白质折叠动态至关重要.
科学领域:
- 蛋白质折叠的动态 蛋白质折叠的动态
- 计算生物物理学的计算生物物理.
- 溶解效应是一种溶解效应.
背景情况:
- 水性溶剂显著影响蛋白质折叠,但其确切作用尚不清楚.
- 了解溶解是解密蛋白质折叠机制的关键.
研究的目的:
- 研究溶解能量对晶格蛋白折叠的影响.
- 分析solvation如何影响折叠合作性和折叠率.
主要方法:
- 蒙特卡洛模拟的27米尔晶格蛋白质.
- 利用基于结构的Gō潜力.
- 分配给暴露于溶剂的残留物的溶解能量 (ɛs).
主要成果:
- 负 ɛs (有利解) 增加了折叠合作性.
- 有利的溶解降低了展开状态的自由能量,提高了折叠屏障.
- 折叠率和本地拓 (相对接触顺序) 之间的相关性得到改善.
结论:
- 溶解潜能可以抵消Gō模型中的原生偏差.
- 基的溶解可能解释了两种状态蛋白中的高折叠合作性.
- 溶解显著影响蛋白质折叠率和拓依赖.
相关概念视频
Cooperative Allosteric Transitions
7.8K
Cooperative allosteric transitions can occur in multimeric proteins, where each subunit of the protein has its own ligand-binding site. When a ligand binds to any of these subunits, it triggers a conformational change that affects the binding sites in the other subunits; this can change the affinity of the other sites for their respective ligands. The ability of the protein to change the shape of its binding site is attributed to the presence of a mix of flexible and stable segments in the...
7.8K
Protein Folding
116.8K
Overview
116.8K
Noncovalent Attractions in Biomolecules
46.3K
Noncovalent attractions are associations within and between molecules that influence the shape and structural stability of complexes. These interactions differ from covalent bonding in that they do not involve sharing of electrons.
Four types of noncovalent interactions are hydrogen bonds, van der Waals forces, ionic bonds, and hydrophobic interactions.
Hydrogen bonding results from the electrostatic attraction of a hydrogen atom covalently bonded to a strong-electronegative atom like oxygen,...
Four types of noncovalent interactions are hydrogen bonds, van der Waals forces, ionic bonds, and hydrophobic interactions.
Hydrogen bonding results from the electrostatic attraction of a hydrogen atom covalently bonded to a strong-electronegative atom like oxygen,...
46.3K
Molecular Chaperones and Protein Folding
17.6K
The native conformation of a protein is formed by interactions between the side chains of its constituent amino acids. When the amino acids cannot form these interactions, the protein cannot fold by itself and needs chaperones. Notably, chaperones do not relay any additional information required for the folding of polypeptides; the native conformation of a protein is determined solely by its amino acid sequence. Chaperones catalyze protein folding without being a part of the folded protein.
The...
The...
17.6K
Ligand Binding and Linkage
4.7K
Allosteric proteins have more than one ligand binding site; the binding of a ligand to any of these sites influences the binding of ligands to the other sites. When a protein is allosteric, its binding sites are called coupled or linked. In the case of enzymes, the site that binds to the substrate is known as the active site and the other site is known as the regulatory site. When a ligand binds to the regulatory site, this leads to conformational changes in the protein that can influence...
4.7K
Protein Organization
6.0K
Proteins are polymers of amino acid residues. They are versatile and responsible for different cellular functions, including DNA replication, molecular transport, catalysis, and structural support. Proteins have a hierarchical structure comprising at least three levels of organization: primary, secondary, and tertiary structure. Some large proteins have a quaternary structure where individual protein subunits are linked together.
The primary structure of a protein is its amino acid sequence....
The primary structure of a protein is its amino acid sequence....
6.0K


