贝杰:生物意识可解释的差异性基因表达排名模型
Hajung Kim1, Mogan Gim2, Seungheun Baek1
1Department of Computer Science and Engineering, Korea University, Seoul 02841, Korea.
Bioinformatics advances
|April 9, 2025
概括
生物意识可解释差异基因表达排名 (BADGER) 模型预测药物细胞相互作用的基因表达变化. 这种可解释的AI通过识别新或耐药疾病的有效治疗方法来推进药物重新用途.
科学领域:
- 计算生物学是一种计算生物学.
- 基因组学就是基因组学.
- 药理学 药理学是指药理学的学科.
背景情况:
- 鉴定受药物影响的基因对于药物重用至关重要.
- 分析基因表达变化揭示了药物影响的基因.
研究的目的:
- 开发一种可解释的模型来预测药物细胞相互作用的基因表达变化.
- 通过了解药物对癌症细胞系的影响,增强药物重定向.
主要方法:
- 生物意识可解释差异性基因表达排名 (BADGER) 模型通过途径信息整合了对药物标的先前知识.
- 它使用基于相似性的嵌入处理新型癌症细胞系.
- 三个注意力阻断模仿级联化学化合物效应.
主要成果:
- 在预测基因表达变化方面,BADGER模型在基线上表现出卓越的性能.
- 它显示了对未经测试的药物细胞系组合的强大预测能力.
- 该模型克服了细胞系范围和可解释性的局限性.
结论:
- 对于药物重新利用,特别是对于新的或耐药性疾病,BADGER模型非常有价值.
- 它通过利用疾病的相似性来促进开发治疗计划.
- 该模型增强了对药物细胞反应的理解.
相关概念视频
What is Gene Expression?
Overview
Gene expression is the process in which DNA directs the synthesis of functional products, that is, proteins. Cells can regulate gene expression at various stages. It allows organisms to generate different cell types and enables cells to adapt to internal and external factors.
Genetic Information Flows from DNA to RNA to Protein
A gene is a stretch of DNA that serves as the blueprint for functional RNAs and proteins. Since DNA is made up of nucleotides and proteins consist of amino...
Gene expression is the process in which DNA directs the synthesis of functional products, that is, proteins. Cells can regulate gene expression at various stages. It allows organisms to generate different cell types and enables cells to adapt to internal and external factors.
Genetic Information Flows from DNA to RNA to Protein
A gene is a stretch of DNA that serves as the blueprint for functional RNAs and proteins. Since DNA is made up of nucleotides and proteins consist of amino...
Chromatin Position Affects Gene Expression
Chromatin is the massive complex of DNA and proteins packaged inside the nucleus. The complexity of chromatin folding and how it is packaged inside the nucleus greatly influences access to genetic information. Generally, the nucleus' periphery is considered transcriptionally repressive, while the cell's interior is considered a transcriptionally active area.
Topologically Associated Domains (TADs)
The 3-dimensional positioning of chromatin in the nucleus influences the timing and level of...
Topologically Associated Domains (TADs)
The 3-dimensional positioning of chromatin in the nucleus influences the timing and level of...
Cell Specific Gene Expression
Multicellular organisms contain a variety of structurally and functionally distinct cell types, but the DNA in all the cells originated from the same parent cells. The differences in the cells can be attributed to the differential gene expression. Liver cells, whose functions include detoxification of blood, production of bile to metabolize fats, and synthesis of proteins essential for metabolism, must express a specific set of genes to perform their functions. Gene expression also varies with...
Epistasis Analysis
Although Mendel chose seven unrelated traits in peas to study gene segregation, most traits involve multiple gene interactions that create a spectrum of phenotypes. When the interaction of various genes or alleles at different locations influences a phenotype, this is called epistasis. Epistasis often involves one gene masking or interfering with the expression of another (antagonistic epistasis). Epistasis often occurs when different genes are part of the same biochemical pathway. The...
What is Gene Expression?
A gene is a stretch of DNA that serves as the blueprint for functional RNAs and proteins. Since DNA is comprised of nucleotides and proteins are comprised of amino acids, a mediator is required to convert the information encoded in DNA into proteins. This mediator is the messenger RNA (mRNA). mRNA copies the blueprint from DNA by a process called transcription. In eukaryotes, transcription occurs in the nucleus by complementary base-pairing with the DNA template. The mRNA is then processed and...
Genetic Variation
Genetic variation is the diversity in DNA sequences found among individuals of the same species. This diversity is crucial for a species' survival because it helps organisms adapt to environmental changes. Genetic variation begins with fertilization, where an egg and sperm cell merge. Each of these cells carries 23 chromosomes, up to 46 in the fertilized egg. Chromosomes are long DNA strands that contain genes, the basic units of heredity.
Genes exist in different versions called alleles, which...
Genes exist in different versions called alleles, which...


