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相关概念视频

Transcription Factors02:16

Transcription Factors

75.5K
Tissue-specific transcription factors contribute to diverse cellular functions in mammals. For example, the gene for beta globin, a major component of hemoglobin, is present in all cells of the body. However, it is only expressed in red blood cells because the transcription factors that can bind to the promoter sequences of the beta globin gene are only expressed in these cells. Tissue-specific transcription factors also ensure that mutations in these factors may impair only the function of...
75.5K
Cooperative Binding of Transcription Regulators02:13

Cooperative Binding of Transcription Regulators

6.3K
Transcriptional regulators bind to specific cis-regulatory sequences in the DNA to regulate gene transcription. These cis-regulatory sequences are very short, usually less than ten nucleotide pairs in length. The short length means that there is a high probability of the exact same sequence randomly occurring throughout the genome.  Since regulators can also bind to groups of similar sequences, this further increases the chances of random binding. Transcriptional regulators form...
6.3K
Cis-regulatory Sequences02:02

Cis-regulatory Sequences

9.6K
Cis-regulatory sequences are short fragments of non-coding DNA that are present on the same chromosomes as the genes that they regulate. These fragments serve as binding sites for transcriptional regulators, proteins that are responsible for controlling gene transcription and differential gene expression across cell types in eukaryotes. Cis-regulatory sequences can be close to the gene of interest or thousands of bases away in the DNA sequence; however, those sequences that are further away are...
9.6K
General Transcription Factors01:30

General Transcription Factors

5.1K
Tissue-specific transcription factors contribute to diverse cellular functions in mammals. For example, the gene for beta globin, a major component of hemoglobin, is present in all cells of the body. However, it is only expressed in red blood cells because the transcription factors that can bind to the promoter sequences of the beta globin gene are only expressed in these cells. Tissue-specific transcription factors also ensure that mutations in these factors may impair only the function of...
5.1K
RNA Polymerase II Accessory Proteins02:36

RNA Polymerase II Accessory Proteins

9.1K
Proteins that regulate transcription can do so either via direct contact with RNA Polymerase or through indirect interactions facilitated by adaptors, mediators, histone-modifying proteins, and nucleosome remodelers. Direct interactions to activate transcription is seen in bacteria as well as in some eukaryotic genes. In these cases, upstream activation sequences are adjacent to the promoters, and the activator proteins interact directly with the transcriptional machinery. For example, in...
9.1K
Co-activators and Co-repressors02:04

Co-activators and Co-repressors

7.2K
Gene transcription is regulated by the synergistic action of several proteins that form a complex at a gene regulatory site. This is observed in eukaryotes, where the regulation of gene expression is a complex process. Regulatory proteins in eukaryotes can broadly be classified into two types – regulators that bind directly to specific DNA sequences and co-regulators that associate with regulatory proteins but cannot directly bind to the DNA. These co-regulators are further divided into...
7.2K

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相关实验视频

Updated: May 21, 2025

High Sensitivity Measurement of Transcription Factor-DNA Binding Affinities by Competitive Titration Using Fluorescence Microscopy
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High Sensitivity Measurement of Transcription Factor-DNA Binding Affinities by Competitive Titration Using Fluorescence Microscopy

Published on: February 7, 2019

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通过DNA引导的转录因子相互作用扩展了人类的基因调节代码

Zhiyuan Xie1, Ilya Sokolov2,3, Maria Osmala4

  • 1State Key Laboratory of Cardiovascular Diseases and Medical Innovation Center, Shanghai East Hospital, School of Medicine, Tongji University, Shanghai, China.

Nature
|April 9, 2025
PubMed
概括

研究人员绘制了人类转录因子 (TF) 之间的相互作用,以了解基因调节代码. 他们发现了成千上万的TF-TF相互作用和新的复合动机,揭示了细胞命运和发育的洞察力.

更多相关视频

Enhanced Yeast One-hybrid Screens To Identify Transcription Factor Binding To Human DNA Sequences
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Enhanced Yeast One-hybrid Screens To Identify Transcription Factor Binding To Human DNA Sequences

Published on: February 11, 2019

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Single-Molecule Imaging of EWS-FLI1 Condensates Assembling on DNA
07:05

Single-Molecule Imaging of EWS-FLI1 Condensates Assembling on DNA

Published on: September 8, 2021

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相关实验视频

Last Updated: May 21, 2025

High Sensitivity Measurement of Transcription Factor-DNA Binding Affinities by Competitive Titration Using Fluorescence Microscopy
06:38

High Sensitivity Measurement of Transcription Factor-DNA Binding Affinities by Competitive Titration Using Fluorescence Microscopy

Published on: February 7, 2019

8.7K
Enhanced Yeast One-hybrid Screens To Identify Transcription Factor Binding To Human DNA Sequences
11:25

Enhanced Yeast One-hybrid Screens To Identify Transcription Factor Binding To Human DNA Sequences

Published on: February 11, 2019

7.9K
Single-Molecule Imaging of EWS-FLI1 Condensates Assembling on DNA
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Single-Molecule Imaging of EWS-FLI1 Condensates Assembling on DNA

Published on: September 8, 2021

2.3K

科学领域:

  • 基因组学
  • 分子生物学
  • 系统生物学

背景情况:

  • 与DNA结合的转录因子 (TFs) 形成基因调节代码,对细胞命运和转录程序至关重要.
  • 人类的基因调节是复杂的,涉及超过1600个相互作用的TF,但它们与DNA结合的相互作用仍然不清楚.

研究的目的:

  • 绘制DNA结合的人类转录因子之间的生化相互作用.
  • 同时确定TF-TF结合偏好,相互作用和结合的DNA序列.
  • 通过互动的TF对形成的新型复合图案.

主要方法:

  • 使用CAP-SELEX (细胞阵列处理 - 通过指数式丰富对联体的系统演化),是一种高吞吐量方法.
  • 选了超过58,000个转录因子-转录因子对,以确定相互作用对及其DNA结合偏好.

主要成果:

  • 确定了2,198个互动的TF对,其中1,329个对特定的模式有偏好的结合.
  • 发现了1131种新的TF-TF复合图案,与单个TF图案不同.
  • 据估计,镜识别了所有人类TF-TF图案的18%至47%.

结论:

  • 新型复合基因富含细胞类型特异性元素,活跃在体内,并且经常在发育共同表达的TF之间形成.
  • 定义胚胎轴的TF之间的相互作用解释了类似的TF如何在这些轴上指定不同的细胞类型.