水/乙醇混合比对葛美西他与库库比特-7-uril结合的影响 基于分子动力学模拟和三维参考交互点模型
Natthiti Chiangraeng1,2, Norio Yoshida3, Haruyuki Nakano4
1Department of Chemistry, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand.
库库尔比特-7-uril-gemcitabine (CB7-GEM) 复合物在纯水中最稳定. 混合溶剂,特别是具有较高乙醇度的混合溶剂,降低CB7-GEM复合物的稳定性和结合亲和力.
科学领域:
- 计算化学计算化学
- 超分子化学 超分子化学
- 物理化学 物理化学
背景情况:
- 了解宿主-客体复合体稳定性对于药物输送应用至关重要.
- 溶剂效应显著影响分子相互作用和结合亲和力.
- 黄瓜是宏环宿主,具有分子识别潜力.
研究的目的:
- 准确计算各种溶剂混合物中库库尔比特-7-uril-gemcitabine (CB7-GEM) 复合物的结合亲缘关系.
- 调查溶剂成分对CB7-GEM复合物的稳定性和形状的影响.
- 确定溶解和键在观察到的结合趋势中的作用.
主要方法:
- 用分子动力学 (MD) 模拟来建模CB7-GEM复合体.
- 三维参考交互点模型 (3D-RISM) 理论被用来计算结合的自由能量.
- 3D-RISM自一致场 (3D-RISM-SCF) 计算确定了CB7和GEM的溶剂依赖点收费.
主要成果:
- 在纯水中,CB7-GEM复合体表现出最高的结合亲和力和稳定性.
- 复合稳定性和结合亲和力随着混合溶剂中乙醇度的增加而下降.
- 高水分中的稳定构造与较低的内部能量和更高的复杂稳定性相关.
- 破坏结的破坏显著影响了溶解的自由能量.
结论:
- 纯水为CB7-GEM复合体形成提供了最有利的环境.
- 溶剂的组成极大地影响了超分子复合物的稳定性和结合亲和力.
- 显式溶剂模型对于准确预测二进制混合物的CB7-GEM复杂行为至关重要.
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