内源逆转录病毒位点和诱导的基因表达变化在日本本土
Shinya Ishihara1, Jun-Ichi Shiraishi2, Saki Shimamoto3
1Department of Animal Science, Nippon Veterinary and Life Science University, 1-7-1 Kyonancho, Musashino, Tokyo, 180-8602, Japan. shinyais@nvlu.ac.jp.
Scientific reports
|April 10, 2025
概括
在基因组中确定了内源逆转录病毒 (ERV),揭示了它们改变基因表达的潜力. 在NAALAD2和PAICS基因附近的ERV插入显示出显著的表达差异,影响了遗传多样性和家禽养殖.
科学领域:
- 基因组学就是基因组学.
- 分子生物学分子生物学
- 进化生物学 进化生物学
背景情况:
- 内源逆转录病毒 (ERV) 集成到宿主基因组中,可以影响基因表达.
- 了解ERV的分布和影响对于鸟类遗传学和繁殖至关重要.
研究的目的:
- 在商业肉,Tosa-Jidori和Yakido中识别ERV基因组位点.
- 研究ERV插入对邻近基因表达的影响.
主要方法:
- 全基因组测序和下一代测序.
- 使用RetroSeq软件识别ERV位置,并使用整合性基因组学查看器和BLASTN进行确认.
- 在已识别的ERV位置附近进行基因表达分析.
主要成果:
- 在整个品种中确定了172个ERV位点,其中75个位于基因附近或基因内.
- 在NAALAD2和PAICS基因中观察到显著的基因表达变异.
- 插入ERV与NAALAD2和PAICS的改变表达有关.
结论:
- 插入ERV可以显著影响的特定基因的表达.
- 这些发现为的遗传多样性和进化历史提供了洞察力.
- 了解ERV基因相互作用可以帮助家禽养殖计划改善健康和生产力.
更多相关视频
相关概念视频
Non-LTR Retrotransposons
11.3K
As the name suggests, non-LTR retrotransposons lack the long terminal repeats characteristic of the LTR retrotransposons. Additionally, both LTR and non-LTR retrotransposons use distinct mechanisms of mobilization. Non-LTR retrotransposons are further divided into two classes - Long interspersed nuclear elements (LINEs) and short interspersed nuclear elements (SINEs), both of which occur abundantly in most mammals, including humans. Some of the active non-LTR retrotransposons in humans are L1...
11.3K
Mechanisms of Retrovirus-induced Cancers
5.0K
Retroviruses are RNA viruses that have been shown to cause cancers in diverse species, including chickens, mice, cats, and monkeys. The RNA genomes of these viruses are first reverse-transcribed into single and then double-stranded DNA (dsDNA) copies. This dsDNA called proviral DNA then integrates into the host genome. Subsequently, the host cell transcribes the proviral DNA in concert with the chromosomal DNA. This leads to the production of viral RNA and proteins that assemble at the host...
5.0K
Rous Sarcoma Virus (RSV) and Cancer
4.9K
Rous Sarcoma virus or RSV was discovered by F. Peyton Rous in the year 1911 as a filterable transmissible agent that could cause tumors in chickens. He won a Nobel Prize for this discovery in 1966. His experiments clearly demonstrated that some cancers could be caused by infectious agents and led to the discovery of many more cancer-causing viruses in animals as well as humans.
RSV is a retrovirus that contains two copies of a plus-strand RNA genome. Its genome consists of four main open...
RSV is a retrovirus that contains two copies of a plus-strand RNA genome. Its genome consists of four main open...
4.9K
Exon Recombination
3.5K
The evolution of new genes is critical for speciation. Exon recombination, also known as exon shuffling or domain shuffling, is an important means of new gene formation. It is observed across vertebrates, invertebrates, and in some plants such as potatoes and sunflowers. During exon recombination, exons from the same or different genes recombine and produce new exon-intron combinations, which might evolve into new genes.
Exon shuffling follows “splice frame rules.” Each exon...
Exon shuffling follows “splice frame rules.” Each exon...
3.5K
LTR Retrotransposons
17.3K
LTR retrotransposons are class I transposable elements with long terminal repeats flanking an internal coding region. These elements are less abundant in mammals compared to other class I transposable elements. About 8 percent of human genomic DNA comprises LTR retrotransposons. Some of the common examples of LTR retrotransposons are Ty elements in yeast and Copia elements in Drosophila.
The internal coding region of LTR retrotransposons and their mechanism of transposition closely resembles a...
The internal coding region of LTR retrotransposons and their mechanism of transposition closely resembles a...
17.3K


