LeaPP:通过机器学习分析原子轨迹来学习多态的学习途径
Steven W Hall1, Porhouy Minh2, Sapna Sarupria2
1Department of Chemical Engineering and Materials Science, University of Minnesota, Minneapolis, Minnesota 55455, United States.
Journal of chemical theory and computation
|April 14, 2025
概括
LeaPP使用粒子历史对晶体核形成轨迹进行了分类,提供了一个动态的,无监督的方法. 这种方法揭示了不同的路径,并预测了由此产生的多态,进步了自我组装的理解.
科学领域:
- 材料科学 材料科学 材料科学
- 计算化学计算化学
- 化学物理 化学物理
背景情况:
- 晶体核和生长对于技术应用至关重要.
- 分子模拟是研究短时间核形成的关键.
- 目前分析静态快照的方法可能会错过关键的动态信息.
研究的目的:
- 介绍LeaPP,一种用于分类核化轨迹的新方法.
- 纳入构成粒子的时间信息以进行增强分析.
- 提供了对晶体核化机制的更细致的理解.
主要方法:
- 根据时间粒子数据对核化轨迹进行分类.
- 分析当地的粒子环境的时间演变.
- 使用无监督的方法,没有传统的订单参数.
主要成果:
- 根据动力学区分不同的进化粒子路径.
- 将核化轨迹描述为不同的路径.
- 展示LeaPP在多个系统中产生多态的预测能力.
结论:
- LeaPP提供了对晶体核的细微,动态的理解.
- 该方法适用于各种自组装问题.
- 对粒子进化的时间分析对于理解复杂过程至关重要.
相关概念视频
Polymer Classification: Crystallinity
2.7K
Unlike ionic or small covalent molecules, polymers do not form crystalline solids due to the diffusion limitations of their long-chain structures. However, polymers contain microscopic crystalline domains separated by amorphous domains.
Crystalline domains are the regions where polymer chains are aligned in an orderly manner and held together in proximity by intermolecular forces. For example, chains in the crystalline domains of polyethylene and nylon are bound together by van der Waals...
Crystalline domains are the regions where polymer chains are aligned in an orderly manner and held together in proximity by intermolecular forces. For example, chains in the crystalline domains of polyethylene and nylon are bound together by van der Waals...
2.7K
Molecular Models
37.6K
Physical models representing molecular architectures of chemical compounds play essential roles in understanding chemistry. The use of molecular models makes it easier to visualize the structures and shapes of atoms and molecules.
37.6K
Molecular Weight of Step-Growth Polymers
2.1K
Step growth polymerization involves bi or multifunctional monomers. Bifunctional monomers react to form linear step growth polymers, whereas multifunctional monomers react to form non-linear or branched polymers.
As the step-growth polymerization involves step-wise condensation of monomers, the molecular weight also builds up eventually. Consequently, high molecular weight polymers are obtained at the late stages of the polymerization, where 99% of monomers have been consumed.
The extent of the...
As the step-growth polymerization involves step-wise condensation of monomers, the molecular weight also builds up eventually. Consequently, high molecular weight polymers are obtained at the late stages of the polymerization, where 99% of monomers have been consumed.
The extent of the...
2.1K
Polymer Classification: Architecture
2.6K
Polymers are classified as linear or branched on the basis of their chain architecture. The polymer chains in linear polymers have a long chain-like structure with minimal to no branching at all. Even if a polymer features large substituent groups on the monomer, which appear as branches to the skeleton, it is not considered a branched polymer. A branched polymer contains secondary polymer chains that arise from the main polymer chain. The branching occurs when the polymer growth shifts from...
2.6K
ATP and Macromolecule Synthesis
5.1K
Biological macromolecules are organic compounds, predominantly composed of carbon atoms. The carbon atoms are covalently bonded with hydrogen, oxygen, nitrogen, and other minor elements. There are four major biological macromolecule classes: carbohydrates, lipids, proteins, and nucleic acids.
Most macromolecules are composed of single subunits, or building blocks, called monomers. The monomers combine with each other using covalent bonds to form larger molecules known as polymers.
Conversion of...
Most macromolecules are composed of single subunits, or building blocks, called monomers. The monomers combine with each other using covalent bonds to form larger molecules known as polymers.
Conversion of...
5.1K
Mechanistic Models: Compartment Models in Algorithms for Numerical Problem Solving
29
Mechanistic models play a crucial role in algorithms for numerical problem-solving, particularly in nonlinear mixed effects modeling (NMEM). These models aim to minimize specific objective functions by evaluating various parameter estimates, leading to the development of systematic algorithms. In some cases, linearization techniques approximate the model using linear equations.
In individual population analyses, different algorithms are employed, such as Cauchy's method, which uses a...
In individual population analyses, different algorithms are employed, such as Cauchy's method, which uses a...
29


