关于知识图及其在药物发现中的当前和潜在应用的更新
Angela Serra1,2,3, Michele Fratello1, Antonio Federico1,2,3
1Finnish Hub for Development and Validation of Integrated Approaches (FHAIVE), Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland.
Expert opinion on drug discovery
|April 14, 2025
概括
知识图表对于药物发现至关重要,集成各种数据以产生新的见解. 未来的工作应该集中在标准化,更广泛的数据集成和利用大型语言模型来实现可访问性.
科学领域:
- 计算机化药物发现.
- 生物医学信息学是生物医学信息学.
- 数据科学是数据科学.
背景情况:
- 知识图在计算药物发现中越来越重要.
- 他们擅长整合异构的生物医学数据,以产生新的假设和知识.
研究的目的:
- 审查药物发现中现有的知识图.
- 为了比较它们的实体,关系和数据源.
- 讨论它们的应用和未来方向.
主要方法:
- 使用谷歌学者和PubMed.Med进行文学评论.
- 在药物发现中分析现有知识图.
- 数据类型,来源和应用的比较.
主要成果:
- 知识图表在药物发现中提供了重大潜力.
- 挑战包括数据集成,一致性和标准化.
- 不同的数据类型 (如化学结构,表观遗传数据) 需要更好的整合.
结论:
- 数据来源和建模的标准化对于推进知识图表构建至关重要.
- 整合不同的数据类型将提高有效性.
- 大型语言模型可以提高知识图洞察力的可访问性,查询性和解释性.
相关概念视频
Drug Discovery: Overview
7.2K
Drug discovery is a multifaceted process involving extensive screening, testing, and optimization of lead compounds to identify potential new drugs for therapeutic use. It combines several approaches, including screening large numbers of natural products, chemical modification of known active molecules, identification of new drug targets, and rational design based on biological mechanisms and drug-receptor structure. These approaches are carried out in both academic research laboratories and...
7.2K
Structure-Activity Relationships and Drug Design
450
Drug design is a dynamic field that involves discovering and developing new medications based on specific biological targets. This process heavily relies on structure-activity relationships (SAR) and quantitative structure-activity relationships (QSAR) to guide the design and optimization of efficient drugs.
SAR studies the intricate relationship between a drug's chemical structure and biological activity. It focuses on understanding how modifications to a drug's structure can influence...
SAR studies the intricate relationship between a drug's chemical structure and biological activity. It focuses on understanding how modifications to a drug's structure can influence...
450
Fundamental Mathematical Principles in Pharmacokinetics: Calculus and Graphs
683
The fundamental mathematical principles, such as calculus and graphs, play crucial roles in analyzing drug movement and determining pharmacokinetic parameters. Differential calculus examines rates of change and helps to determine the dissolution rate of drugs in biofluids, as well as how drug concentrations change over time. For instance, it can help calculate the rate of elimination of a drug from the body based on its concentration-time profile.
On the other hand, integral calculus focuses on...
On the other hand, integral calculus focuses on...
683
Protein-protein Interfaces
12.4K
Many proteins form complexes to carry out their functions, making protein-protein interactions (PPIs) essential for an organism's survival. Most PPIs are stabilized by numerous weak noncovalent chemical forces. The physical shape of the interfaces determines the way two proteins interact. Many globular proteins have closely-matching shapes on their surfaces, which form a large number of weak bonds. Additionally, many PPIs occur between two helices or between a surface cleft and a...
12.4K
Principles of Drug Action
5.6K
Drugs are chemical substances that modify biological responses by interacting with macromolecular targets such as receptors, ion channels, transporters, and enzymes. Pharmacodynamics describes the course of action of drugs leading to the physiological effect at a specific site in the body.
Drugs can be agonists or antagonists. Like the endogenous ligands, agonists always bind and activate the target to produce a cellular response. Agonist binding induces a conformational change which in turn...
Drugs can be agonists or antagonists. Like the endogenous ligands, agonists always bind and activate the target to produce a cellular response. Agonist binding induces a conformational change which in turn...
5.6K
G Protein-coupled Receptors
10.7K
G Protein-Coupled Receptors or GPCRs are membrane-bound receptors that transiently associate with heterotrimeric G proteins and induce an appropriate response to sensory stimuli such as light, odors, hormones, cytokines, or neurotransmitters.
GPCRs are also called heptahelical, 7TM, or serpentine receptors, and consist of seven (H1-H7) transmembrane alpha-helices that span the bilayer to form a cylindrical core. The transmembrane helices are connected by three extracellular loops and three...
GPCRs are also called heptahelical, 7TM, or serpentine receptors, and consist of seven (H1-H7) transmembrane alpha-helices that span the bilayer to form a cylindrical core. The transmembrane helices are connected by three extracellular loops and three...
10.7K


