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相关概念视频

Duplication of Chromatin Structure02:05

Duplication of Chromatin Structure

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The process of chromosome duplication during cell division requires genome-wide disruption and re-assembly of chromatin. The chromatin structure must be accurately inherited, reassembled, and maintained in the daughter cells to ensure lineage propagation.
The basic unit of the chromatin is the nucleosome, consisting of DNA wrapped around octameric histone proteins and short stretches of linker DNA separating individual nucleosomes. The histone proteins within the nucleosome have their...
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Chromatin Structure Regulates pre-mRNA Processing02:41

Chromatin Structure Regulates pre-mRNA Processing

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In eukaryotic cells, nascent mRNA transcripts need to undergo many post-transcriptional modifications to reach the cell cytoplasm and translate into functional proteins. For a long time, transcription and pre-mRNA processing were considered two independent events that occur sequentially in the cell. However, it has now been well established that transcription and pre-mRNA processing are two simultaneous processes that are precisely regulated inside the cell.
The chromatin structure, especially...
6.8K
Chromatin Position Affects Gene Expression02:35

Chromatin Position Affects Gene Expression

23.2K
Chromatin is the massive complex of DNA and proteins packaged inside the nucleus. The complexity of chromatin folding and how it is packaged inside the nucleus greatly influences  access to genetic information. Generally, the nucleus' periphery is considered transcriptionally repressive, while the cell's interior is considered a transcriptionally active area. 
Topologically Associated Domains (TADs)
The 3-dimensional positioning of chromatin in the nucleus influences the...
23.2K
Histone Modification02:32

Histone Modification

12.9K
The histone proteins have a flexible N-terminal tail extending out from the nucleosome. These histone tails are often subjected to post-translational modifications such as acetylation, methylation, phosphorylation, and ubiquitination. Particular combinations of these modifications form “histone codes” that influence the chromatin folding and tissue-specific gene expression.
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone...
12.9K
Spreading of Chromatin Modifications02:25

Spreading of Chromatin Modifications

8.1K
The histone proteins in the nucleosomes are post-translationally modified (PTM) to increase or decrease access to DNA. The commonly observed PTMs are methylation, acetylation, phosphorylation, and ubiquitination of lysine amino acids in the histone H3 tail region. These histone modifications have specific meaning for the cell. Hence, they are called "histone code". The protein complex involved in histone modification is termed as "reader-writer" complex.
Writers
The writer...
8.1K
Epigenetic Regulation01:37

Epigenetic Regulation

3.0K
Epigenetic changes alter the physical structure of the DNA without changing the genetic sequence and often regulate whether genes are turned on or off. This regulation ensures that each cell produces only proteins necessary for its function. For example, proteins that promote bone growth are not produced in muscle cells. Epigenetic mechanisms play an essential role in healthy development. Conversely, precisely regulated epigenetic mechanisms are disrupted in diseases like cancer.
X-chromosome...
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相关实验视频

Updated: May 13, 2025

Chromatin Extraction from Frozen Chimeric Liver Tissue for Chromatin Immunoprecipitation Analysis
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Chromatin Extraction from Frozen Chimeric Liver Tissue for Chromatin Immunoprecipitation Analysis

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预测基因表达因染色体结构修饰而发生的变化.

Swayamshree Senapati1, Inayat Ullah Irshad2, Ajeet K Sharma2,3

  • 1School of Basic Sciences, Indian Institute of Technology Bhubaneswar, Argul, Odisha, 752050, India.

NPJ systems biology and applications
|April 15, 2025
PubMed
概括
此摘要是机器生成的。

这项研究介绍了一个计算框架,将染色体3D组织 (Hi-C) 与基因转录联系起来. 该模型准确地预测了破坏边界后的基因表达变化,突出了3D基因组结构对基因调节的影响.

更多相关视频

Repressing Gene Transcription by Redirecting Cellular Machinery with Chemical Epigenetic Modifiers
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Repressing Gene Transcription by Redirecting Cellular Machinery with Chemical Epigenetic Modifiers

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Chromatin Immunoprecipitation Assay Using Micrococcal Nucleases in Mammalian Cells
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Chromatin Immunoprecipitation Assay Using Micrococcal Nucleases in Mammalian Cells

Published on: May 10, 2019

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相关实验视频

Last Updated: May 13, 2025

Chromatin Extraction from Frozen Chimeric Liver Tissue for Chromatin Immunoprecipitation Analysis
09:26

Chromatin Extraction from Frozen Chimeric Liver Tissue for Chromatin Immunoprecipitation Analysis

Published on: March 23, 2021

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Repressing Gene Transcription by Redirecting Cellular Machinery with Chemical Epigenetic Modifiers
10:28

Repressing Gene Transcription by Redirecting Cellular Machinery with Chemical Epigenetic Modifiers

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Chromatin Immunoprecipitation Assay Using Micrococcal Nucleases in Mammalian Cells
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科学领域:

  • 基因组学就是基因组学.
  • 计算生物学 计算生物学
  • 分子生物学分子生物学

背景情况:

  • 染色体的空间组织对于基因转录至关重要.
  • 将人口平均的Hi-C数据与功能基因表达结果相连接是具有挑战性的.

研究的目的:

  • 开发一个计算框架,将Hi-C接触地图与基因转录联系起来.
  • 模拟染色体结构扰乱对基因表达的影响.

主要方法:

  • 利用 Hi-C 数据提供的珠弹聚合物模型来生成 3D 染色体构造.
  • 采用马尔科夫链模型与分子动力学模拟相结合,将形状与转录水平联系起来.
  • 模拟了一个CTCF介导的TAD边界的扰动.

主要成果:

  • 该框架定量复制了实验观察到的基因表达变化 (sox9和kcnj2).
  • 证明TAD边界的破坏通过增强增强器的可访问性来增加kcnj2转录.
  • 该模型可以根据它们对基因表达的影响来识别功能增强剂.

结论:

  • 开发的框架增强了对染色体3D架构和基因调节之间的关系的理解.
  • 这种方法提供了一种定量方法来评估染色体空间组织的功能影响.