一个可解释的数据集,将面部表型和基因与罕见遗传疾病联系起来
Jie Song1, Mengqiao He1, Shumin Ren2
1Department of Ophthalmology and Institutes for Systems Genetics, Frontiers Science Center for Disease-related Molecular Network, West China Hospital, Sichuan University, Chengdu, 610212, China.
Scientific data
|April 15, 2025
概括
研究人员创建了面部表型基因疾病数据集 (FGDD),以帮助诊断罕见的遗传疾病. 这种可解释的数据集将面部表型,基因和疾病联系起来,以获得更好的AI诊断工具.
科学领域:
- 遗传学 遗传学 是一个
- 医疗信息学 医疗信息学
- 人工智能的人工智能
背景情况:
- 面部表型是诊断罕见遗传疾病的关键指标.
- 目前的AI诊断工具缺乏可解释性,阻碍了临床的信任和应用.
- 需要全面的数据集,将面部特征,遗传因素和疾病联系起来.
研究的目的:
- 引入面部表型基因疾病数据集 (FGDD).
- 为训练罕见遗传疾病的AI诊断模型提供可解释的数据集.
- 促进对基因,疾病和面部表型之间的复杂关系的研究.
主要方法:
- 从509个研究出版物中汇总了数据.
- 创建了1147个数据记录,详细介绍了患者群体,人口统计,遗传变异和面部表型.
- 包括689个记录的疾病标签,包括197个致病基因和211个疾病实体.
主要成果:
- FGDD包含1,147个记录,其中包括197个基因,437种表型和211种疾病.
- 基线和可解释性验证证实了数据集的实用性和有效性.
- 该数据集支持开发具有可解释AI能力的诊断模型.
结论:
- FGDD是罕见遗传疾病诊断的有效,可解释的资源.
- 该数据集使人工智能模型的训练能够提供可解释的诊断预测.
- FGDD作为基因-疾病-表型相互作用的未来研究的基础.
相关概念视频
Genome-wide Association Studies-GWAS
12.1K
Genome-wide association studies or GWAS are used to identify whether common SNPs are associated with certain diseases. Suppose specific SNPs are more frequently observed in individuals with a particular disease than those without the disease. In that case, those SNPs are said to be associated with the disease. Chi-square analysis is performed to check the probability of the allele likely to be associated with the disease.
GWAS does not require the identification of the target gene involved in...
GWAS does not require the identification of the target gene involved in...
12.1K
Pedigree Analysis
82.4K
Overview
82.4K
Genetic Lingo
98.4K
Overview
98.4K
Pleiotropy
38.2K
Pleiotropy is the phenomenon in which a single gene impacts multiple, seemingly unrelated phenotypic traits. For example, defects in the SOX10 gene cause Waardenburg Syndrome Type 4, or WS4, which can cause defects in pigmentation, hearing impairments, and an absence of intestinal contractions necessary for elimination. This diversity of phenotypes results from the expression pattern of SOX10 in early embryonic and fetal development. SOX10 is found in neural crest cells that form melanocytes,...
38.2K
Incomplete Dominance
20.4K
Gregor Mendel's work (1822 - 1884) was primarily focused on pea plants. Through his initial experiments, he determined that every gene in a diploid cell has two variants called alleles inherited from each parent. He suggested that amongst these two alleles, one allele is dominant in character and the other recessive. The combination of alleles determines the phenotype of a gene in an organism.
20.4K
X-linked Traits
51.8K
In most mammalian species, females have two X sex chromosomes and males have an X and Y. As a result, mutations on the X chromosome in females may be masked by the presence of a normal allele on the second X. In contrast, a mutation on the X chromosome in males more often causes observable biological defects, as there is no normal X to compensate. Trait variations arising from mutations on the X chromosome are called “X-linked”.
51.8K


