玉米中细胞类型特异性cis调节的遗传结构
Alexandre P Marand1, Luguang Jiang2, Fabio Gomez-Cano2
1Department of Genetics, University of Georgia, Athens, GA, USA.
概括
这项研究揭示了玉米的基因变异如何影响基因表达和特征. 它显示了转子子活动和局部适应如何塑造玉米
科学领域:
- 基因组学
- 植物生物学
- 进化遗传学
背景情况:
- 基因表达和复杂的表现型是由 cis 调节元素调节的.
- 了解基因变异对cis调节的影响至关重要,但有限.
研究的目的:
- 使用单细胞基因组学研究玉米的 cis 调节多样性.
- 确定化玉米特有的Cis调节元素.
- 确定遗传变异如何影响染色体可访问性和特征变异.
主要方法:
- 一个单细胞基因组研究了172种玉米的700多万个核.
- 人口遗传学原理用于精细绘制遗传变异.
- 将变异数据与特征变异和种群差异化整合.
主要成果:
- 发现了化玉米特有的 cis-regulatory 元素和转子子活动的作用.
- 精细映射的约22,000种与染色体可访问性相关的变体,具有细胞类型特异性的影响.
- 在TEOSINTE分支1 / CYCLOIDEA / 增殖细胞因子结合部位中确定变异,作为染色质可访问性的关键决定因素.
结论:
- 当地适应在特定的细胞环境中重新连接了监管网络.
- 改变的监管网络影响了玉米的开花时间.
- 调节性元素中的遗传变异是玉米表型多样性的关键驱动因素.
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