高频转录导致快速的R循环形成
Bradleigh Palmer1, Chun-Ying Lee2, Leya Yang2
1Department of Biophysics, Johns Hopkins University, Baltimore, Maryland, USA.
The Journal of biological chemistry
|April 18, 2025
概括
转录频率和速率受到RNA聚合酶和NTP的影响,控制R循环的形成. 这项研究揭示了转录动态如何控制R循环结构,影响基因调节.
科学领域:
- 分子生物学分子生物学
- 遗传学 是一个遗传学.
- 生物物理学的生物物理.
背景情况:
- R环是转录过程中形成的三链核酸结构.
- 之前的研究表明,R-循环和G-四复合体对转录进行上调.
- 链接转录活动与R循环形成的机制仍然不清楚.
研究的目的:
- 研究转录的动力学及其对R循环形成的影响.
- 阐明在转录过程中产生R循环的机制基础.
主要方法:
- 单个分子的Förster共振能量转移 (smFRET).
- 电泳运动移动转移试验 (EMSA).
- 随机模拟建模. 随机模拟建模.
主要成果:
- 通过转录频率和速率来调节R循环的形成.
- 转录率是由RNA聚合酶度控制的.
- NTP度会影响R循环形成的速度.
- 渐进的促进器开放时间是R循环生成的合理机制.
- 转录频率是R循环形成的主要决定因素.
结论:
- 转录动态复杂地平衡了R循环形成.
- 这为R循环的结构功能关系提供了新的见解.
- 了解R循环调节对于基因表达控制至关重要.
相关概念视频
Bacterial Transcription
27.8K
RNA polymerase (RNAP) carries out DNA-dependent RNA synthesis in both bacteria and eukaryotes. Bacteria do not have a membrane-bound nucleus. So, transcription and translation occur simultaneously, on the same DNA template.
Transcription can be divided into three main stages, each involving distinct DNA sequences to guide the polymerase. These are:
Transcription can be divided into three main stages, each involving distinct DNA sequences to guide the polymerase. These are:
27.8K
Transcription Attenuation in Prokaryotes
15.0K
Transcriptional attenuation occurs when RNA transcription is prematurely terminated due to the formation of a terminator mRNA hairpin structure. Bacteria use these hairpins to regulate the transcription process and control the synthesis of several amino acids including histidine, lysine, threonine, and phenylalanine. Transcription attenuation takes place in the non-coding regions of mRNA.
There are several different mechanisms used to attenuate transcription. In ribosome mediated...
There are several different mechanisms used to attenuate transcription. In ribosome mediated...
15.0K
Transcription Elongation Factors
10.6K
Transcription elongation is a dynamic process that alters depending upon the sequence heterogeneity of the DNA being transcribed. Hence, it is not surprising that the elongation complex's composition also varies along the way while transcribing a gene.
The transcription elongation is regulated via pausing of RNA polymerase on several occasions during transcription. In bacteria, these halts are necessary because the transcription of DNA into mRNA is coupled to the translation of that mRNA...
The transcription elongation is regulated via pausing of RNA polymerase on several occasions during transcription. In bacteria, these halts are necessary because the transcription of DNA into mRNA is coupled to the translation of that mRNA...
10.6K
Chromatin Structure Regulates pre-mRNA Processing
6.9K
In eukaryotic cells, nascent mRNA transcripts need to undergo many post-transcriptional modifications to reach the cell cytoplasm and translate into functional proteins. For a long time, transcription and pre-mRNA processing were considered two independent events that occur sequentially in the cell. However, it has now been well established that transcription and pre-mRNA processing are two simultaneous processes that are precisely regulated inside the cell.
The chromatin structure, especially...
The chromatin structure, especially...
6.9K
Transcription Initiation
16.0K
Initiation is the first step of transcription in eukaryotes. Prokaryotic RNA Polymerase (RNAP) can bind to the template DNA and start transcribing. On the other hand, transcription in eukaryotes requires additional proteins, called transcription factors, to first bind to the promoter region in the DNA template. This binding helps recruit the specific RNAP that can assemble on the DNA and start transcription.
The promoters and enhancers and their accessory proteins allow tight regulation of...
The promoters and enhancers and their accessory proteins allow tight regulation of...
16.0K
Restarting Stalled Replication Forks
5.7K
DNA replication is initiated at sites containing predefined DNA sequences known as origins of replication. DNA is unwound at these sites by the minichromosome maintenance (MCM) helicase and other factors such as Cdc45 and the associated GINS complex.The unwound single strands are protected by replication protein A (RPA) until DNA polymerase starts synthesizing DNA at the 5’ end of the strand in the same direction as the replication fork. To prevent the replication fork from falling apart,...
5.7K


