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相关概念视频

Nuclear Localization Signals and Import01:46

Nuclear Localization Signals and Import

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Proteins targeted to the nucleus carry short stretches of amino acid sequences called the nuclear localization signal or NLS. Classical nuclear localization signals are of two types: monopartite and bipartite NLS. Monopartite classical NLS (cNLS) consists of a single cluster of 4-8 amino acids. Bipartite cNLS consists of two clusters of  2-3 amino acids and a 9-12 residue long proline-rich linker bridging the two clusters. Signal clusters are rich in positively charged amino acids such as...
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Nuclear Protein Sorting01:34

Nuclear Protein Sorting

4.4K
Nuclear protein sorting is the selective trafficking of histones, polymerases, gene regulatory proteins into the nucleus and exporting RNAs and ribosomes to the cytosol. It is a tightly controlled process that regulates gene expression within a cell.
Proteins targeted to the nucleus carry nuclear localization signals or NLS recognized by import receptors in the cytosol. Similarly, proteins with nuclear export signals are recognized by export receptors. Import and export receptors are...
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Proteomics01:33

Proteomics

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A proteome is the entire set of proteins that a cell type produces. We can study proteomes using the knowledge of genomes because genes code for mRNAs, and the mRNAs encode proteins. Although mRNA analysis is a step in the right direction, not all mRNAs are translated into proteins.
Proteomics is the study of proteomes' function. It involves the large-scale systematic study of the proteome to denote the protein complement expressed by a genome. Scientist Mark Wilkins coined the term...
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Regulation of Nuclear Protein Sorting01:45

Regulation of Nuclear Protein Sorting

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Nuclear protein sorting regulates nucleus composition and gene expression, crucial for determining the fate of a eukaryotic cell. Hence, the entry and exit of molecules across the nuclear envelope is a tightly controlled process. Nuclear protein sorting can be inhibited by one of the following ways: 1) masking cargo signal sequences, 2) modifying the nuclear receptor's affinity for cargo, 3) controlling the nuclear pore size, 4) retaining the cargo during its transit to the cytosol or the...
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相关实验视频

Updated: May 10, 2025

Using Caenorhabditis elegans as a Model System to Study Protein Homeostasis in a Multicellular Organism
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Localizatome:一个数据库,用于蛋白质中依赖应激的亚细胞局部化变化.

Takahide Matsushima1, Yuki Naito1, Tomoki Chiba1

  • 1Department of Systems BioMedicine, Graduate School of Medical and Dental Sciences, Institute of Science Tokyo, 1-5-45 Yushima, Bunkyo-ku, Tokyo 113-8510, Japan.

Database : the journal of biological databases and curation
|April 21, 2025
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概括

Localizatome数据库绘制了人类蛋白质在氧化应激过程中如何在细胞内移动的地图. 本资源揭示了动态蛋白质局部化的变化,对于理解细胞应激反应和疾病至关重要.

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Methods to Classify Cytoplasmic Foci as Mammalian Stress Granules
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Inducible LAP-tagged Stable Cell Lines for Investigating Protein Function, Spatiotemporal Localization and Protein Interaction Networks
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相关实验视频

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Methods to Classify Cytoplasmic Foci as Mammalian Stress Granules
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科学领域:

  • 细胞生物学 细胞生物学
  • 分子生物学分子生物学
  • 生物信息学是一种生物信息学.

背景情况:

  • 蛋白质细胞下定位是细胞功能和疾病的关键.
  • 现有的数据库缺乏关于动态,压力诱导的蛋白质定位变化的数据.
  • 了解这些动态对于阐明疾病机制至关重要.

研究的目的:

  • 创建一个全面的数据库压力诱导的蛋白质定位动态.
  • 分析氧化应激下人类细胞中蛋白质局部化的变化.
  • 提供对细胞应激反应数据的开放访问.

主要方法:

  • 开发了一种高通量显微镜系统.
  • 应用机器学习算法来分析蛋白质定位.
  • 在氧化应激之前和之后,研究了HeLa细胞中的10,287个光蛋白融合的人类蛋白质.

主要成果:

  • 确定了1910个具有氧化应激依赖局部化变化的蛋白质,经常形成不同的焦点.
  • 在这些蛋白质中发现了压力颗粒组装因子,自蛋白和信号通路组件.
  • 确定了特定的氨基酸动机和与压力诱导的蛋白质再分配相关的内在无序区域.

结论:

  • Localizatome数据库捕获了关键的压力诱导的蛋白质定位动态.
  • 数据支持关于细胞应激反应和疾病机制的研究.
  • 为研究人员在压力下研究细胞动态提供了宝贵的资源.