质子酸盐和酸盐侧链可以通过强和短键在生物大分子复合体中识别基基组
Jens Wöhnert1, Konstantin Neissner2, Elke Duchardt-Ferner2
1Goethe-Universitat Frankfurt am Main, Institute of Molecular Biosciences, Max-von-Laue-Strasse 9, RNA Strukturbiologie, 60438, Frankfurt am Main, GERMANY.
Angewandte Chemie (International ed. in English)
|April 24, 2025
概括
像谷氨酸这样的酸性氨基酸可以通过捐赠键与基群相互作用,挑战了关于蛋白质核酸识别中电荷排斥的先前假设.
科学领域:
- 生物化学 生物化学
- 结构生物学 结构生物学
- 分子生物学分子生物学
背景情况:
- 基群在生物分子中至关重要,如核酸和信号核酸.
- 蛋白质通常使用极性或正电荷的氨基酸与基基相互作用.
- 酸性氨基酸 (亚斯巴达酸,谷氨酸) 通常被认为可以排斥基基.
研究的目的:
- 为了研究酸性氨基酸在基群识别中的作用.
- 重新评估酸性氨基酸对这些相互作用的假设有害影响.
主要方法:
- 作为一个模型系统,使用了一个循环迪加尼酸盐 (c-di-GMP) 结合蛋白 (PilF的GSPII-B域).
- 从蛋白质数据库 (PDB) 中分析了蛋白质核酸复杂结构.
主要成果:
- 证明谷氨酸侧链可以在中性pH下被质子化,并向基基群捐赠键.
- 鉴定了PDB中各种蛋白质家族中蛋白质酸氨基酸和基群之间的键的频繁发生.
结论:
- 酸性氨基酸在基组识别中的作用需要重新评估.
- 质子化酸性氨基酸可以积极参与结合基基的过程,这与之前的观点相反.
相关概念视频
Phosphodiester Linkages
97.8K
Overview
Phosphodiester bond forms when a phosphoric acid molecule (H3PO4) links with two hydroxyl groups (–OH) of two other molecules, forming two ester bonds. Two water molecules are released in this process. The phosphodiester bond is commonly found in nucleic acids (DNA and RNA) and plays a critical role in their structure and function.
Phosphodiester Bonds Link Nucleotides Together
DNA and RNA are polynucleotides or long chains of nucleotides that are linked together. A nucleotide is...
Phosphodiester bond forms when a phosphoric acid molecule (H3PO4) links with two hydroxyl groups (–OH) of two other molecules, forming two ester bonds. Two water molecules are released in this process. The phosphodiester bond is commonly found in nucleic acids (DNA and RNA) and plays a critical role in their structure and function.
Phosphodiester Bonds Link Nucleotides Together
DNA and RNA are polynucleotides or long chains of nucleotides that are linked together. A nucleotide is...
97.8K
Amino acids
87.4K
Amino acids are the monomers that comprise proteins. Each amino acid has the same fundamental structure, which consists of a central carbon atom, or the alpha (α) carbon, bonded to an amino group (NH2), a carboxyl group (COOH), and to a hydrogen atom. Every amino acid also has another atom or group of atoms bonded to the central atom known as the R group. There are 20 common amino acids present in proteins, each with a different R group. Variation in the amino acid sequence is responsible...
87.4K
Peptide Bonds
71.3K
A peptide bond covalently attaches amino acids through a dehydration reaction. One amino acid's carboxyl group and another amino acid's amino group combine, releasing a water molecule. The resulting bond is the peptide bond. The products that such linkages form are peptides. As more amino acids join this growing chain, the resulting chain is a polypeptide. Each polypeptide has a free amino group at one end. This end has the N-terminal, or the amino-terminal, and the other end has a free...
71.3K
Protein Kinases and Phosphatases
12.9K
Proteins undergo chemical modifications that trigger changes in the charge, structure, and conformation of the proteins. Phosphorylation, acetylation, glycosylation, nitrosylation, ubiquitination, lipidation, methylation, and proteolysis are various protein modifications that regulate protein activity. Such modifications are usually enzyme-driven.
Protein kinases
Many proteins in the cell are regulated by phosphorylation, the addition of a phosphate group. A family of enzymes called kinases...
Protein kinases
Many proteins in the cell are regulated by phosphorylation, the addition of a phosphate group. A family of enzymes called kinases...
12.9K
Ligand Binding Sites
12.6K
Proteins are dynamic macromolecules that carry out a wide variety of essential processes; however, the activities of most proteins depend on their interactions with other molecules or ions, known as ligands.
Protein-ligand interactions are quite specific; even though numerous potential ligands surround a cellular protein at any given time, only a particular ligand can bind to that protein. Moreover, a ligand binds only to a dedicated area on the surface of the protein, known as the...
Protein-ligand interactions are quite specific; even though numerous potential ligands surround a cellular protein at any given time, only a particular ligand can bind to that protein. Moreover, a ligand binds only to a dedicated area on the surface of the protein, known as the...
12.6K
Protein Folding
116.6K
Overview
116.6K


