Jove
Visualize
联系我们
JoVE
x logofacebook logolinkedin logoyoutube logo
关于 JoVE
概览领导团队博客JoVE 帮助中心
作者
出版流程编辑委员会范围与政策同行评审常见问题投稿
图书馆员
用户评价订阅访问资源图书馆顾问委员会常见问题
研究
JoVE JournalMethods CollectionsJoVE Encyclopedia of Experiments存档
教育
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab Manual教师资源中心教师网站
使用条款与条件
隐私政策
政策

相关概念视频

您也可能阅读

相关文章

通过共同作者、期刊和引用图与本文相关的文章。

排序
Same author

Image-enabled cell sorting permits prospective isolation of primitive hematopoietic stem cell subsets with distinct functional potential.

Experimental hematology·2026
Same author

The heat shock transcription factor, HSF1, stimulates the catalytic engagement of topoisomerase IIβ over topoisomerase IIα.

Molecular cell·2026
Same author

Mapping the Conformational Landscape of DNA Minicircles Through Atomic Force Microscopy and Shape Space Analysis.

Small (Weinheim an der Bergstrasse, Germany)·2026
Same author

Global survey of microscopy core facilities.

Journal of microscopy·2026
Same author

Deep Learning of Histopathology Predicts Outcomes After Surgery for Pancreatic Cancer.

JCO clinical cancer informatics·2026
Same author

Global survey of Flow Cytometry core facilities 2021.

Journal of microscopy·2026

相关实验视频

Updated: May 10, 2025

Rapid Analysis and Exploration of Fluorescence Microscopy Images
11:41

Rapid Analysis and Exploration of Fluorescence Microscopy Images

Published on: March 19, 2014

12.1K

细胞PhePy:CellPhe工具包的Python实现,用于自动化从显微镜时间缩短视频中的细胞表型.

Laura Wiggins1, Stuart Lacy2, Graeme Park3,4

  • 1Department of Materials Science and Engineering, University of Sheffield, Sheffield, UK.

Journal of microscopy
|April 25, 2025
PubMed
概括

一个新的Python工具CellPhePy自动化了从显微镜图像中的细胞表型. 它增强了细胞分析和分类,为生物研究提供了用户友好,灵活的解决方案.

关键词:
细胞表型化 细胞表型化图像分析图像分析机器学习是机器学习.显微镜 显微镜是指使用显微镜.这是一个开源的开源软件.细分化 细分化的细分化时间的流逝时间的流逝追踪 追踪 追踪 追踪

更多相关视频

Author Spotlight: Generating Neuronal Phenotypic Profiles - A Protocol to Culture and Image Human Midbrain Dopaminergic Neurons
09:21

Author Spotlight: Generating Neuronal Phenotypic Profiles - A Protocol to Culture and Image Human Midbrain Dopaminergic Neurons

Published on: July 7, 2023

1.4K
AMEBaS: Automatic Midline Extraction and Background Subtraction of Ratiometric Fluorescence Time-Lapses of Polarized Single Cells
06:03

AMEBaS: Automatic Midline Extraction and Background Subtraction of Ratiometric Fluorescence Time-Lapses of Polarized Single Cells

Published on: June 23, 2023

385

相关实验视频

Last Updated: May 10, 2025

Rapid Analysis and Exploration of Fluorescence Microscopy Images
11:41

Rapid Analysis and Exploration of Fluorescence Microscopy Images

Published on: March 19, 2014

12.1K
Author Spotlight: Generating Neuronal Phenotypic Profiles - A Protocol to Culture and Image Human Midbrain Dopaminergic Neurons
09:21

Author Spotlight: Generating Neuronal Phenotypic Profiles - A Protocol to Culture and Image Human Midbrain Dopaminergic Neurons

Published on: July 7, 2023

1.4K
AMEBaS: Automatic Midline Extraction and Background Subtraction of Ratiometric Fluorescence Time-Lapses of Polarized Single Cells
06:03

AMEBaS: Automatic Midline Extraction and Background Subtraction of Ratiometric Fluorescence Time-Lapses of Polarized Single Cells

Published on: June 23, 2023

385

科学领域:

  • * 细胞生物学 细胞生物学
  • * 图像分析 图像分析
  • * 生物信息学是一门学科.

背景情况:

  • *CellPhe工具包,一个R包,此前启用自动细胞表型从ptychography时间缩短视频.
  • *越来越需要基于Python的工具来改善与现有的图像分析软件的互操作性.

研究的目的:

  • * 开发一个CellPhe工具包的Python实现,命名为CellPhePy.
  • * 增强细胞表型能力,扩大生物研究中的分析应用.

主要方法:

  • *CellPhePy保留了核心功能:表型特征提取,时间序列分析,特征选择和细胞类型分类.
  • * 集成与CellPose进行细分和TrackMate进行跟踪,可从显微镜图像进行完全自动化分析.
  • * 提供了一种改进的方法来识别区分特征和扩展多类分类支持.

主要成果:

  • *CellPhePy提供自动,端到端的细胞细分,跟踪和特征提取.
  • * 增强的特征选择和多类分类功能提高了分析能力.
  • * 该套件灵活,模块化,可根据各种成像方式和研究问题进行定制.

结论:

  • *CellPhePy为细胞表型化提供了一个强大,可访问和自动化的解决方案.
  • *其基于Python的设计增强了生物图像分析中的互操作性和可用性.
  • * 该工具包可以通过PyPi或GitHub轻松获得,并添加了一个GUI以方便用户.