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相关概念视频

RNA-seq03:21

RNA-seq

9.7K
RNA sequencing, or RNA-Seq, is a high-throughput sequencing technology used to study the transcriptome of a cell. Transcriptomics helps to interpret the functional elements of a genome and identify the molecular constituents of an organism. Additionally, it also helps in understanding the development of an organism and the occurrence of diseases. 
Before the discovery of RNA-seq, microarray-based methods and Sanger sequencing were used for transcriptome analysis. However, while...
9.7K
Sanger Sequencing01:57

Sanger Sequencing

751.2K
DNA sequencing is a fundamental technique that is routinely used in the biological sciences. This method can be applied to a range of questions at different scales - from the sequencing of a cloned DNA fragment or the study of a mutation in a gene up to whole-genome sequencing. However, despite the widespread use of sequencing today, it was not until 1977 that Fredrick Sanger and his collaborators developed the chain-termination method to decode DNA sequences. It relies on the separation of a...
751.2K
Next-generation Sequencing03:00

Next-generation Sequencing

86.1K
The first human genome sequencing project cost $2.7 billion and was declared complete in 2003, after 15 years of international cooperation and collaboration between several research teams and funding agencies. Today, with the advent of next-generation sequencing technologies, the cost and time of sequencing a human genome have dropped over 100 fold.
Next-Generation Sequencing Methods
Although all next-generation methods use different technologies, they all share a set of standard features....
86.1K

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相关实验视频

Updated: May 10, 2025

Sequencing of mRNA from Whole Blood using Nanopore Sequencing
11:26

Sequencing of mRNA from Whole Blood using Nanopore Sequencing

Published on: June 3, 2019

13.5K

使用贝叶斯分析和纳米孔测序的无条码多重体等离子体测序.

Masaaki Uematsu1, Jeremy M Baskin1,2

  • 1Weill Institute for Cell and Molecular Biology, Cornell University, Ithaca, United States.

eLife
|April 25, 2025
PubMed
概括
此摘要是机器生成的。

我们开发了一种计算方法,SAVEMONEY,用于多重化等离子体进行纳米孔测序. 这种方法显著降低了整体质粒测序的成本,使其更容易获得生命科学研究.

关键词:
贝叶斯分析是贝叶斯分析.计算生物学是计算生物学.人类 人类 人类 人类 人类 人类 人类纳米孔测序的测序等离子体测序 等离子体测序系统生物学 系统生物学整体等离子体测序

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Nanopore DNA Sequencing for Metagenomic Soil Analysis
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Nanopore DNA Sequencing for Metagenomic Soil Analysis

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Validating Whole Genome Nanopore Sequencing, using Usutu Virus as an Example
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Validating Whole Genome Nanopore Sequencing, using Usutu Virus as an Example

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相关实验视频

Last Updated: May 10, 2025

Sequencing of mRNA from Whole Blood using Nanopore Sequencing
11:26

Sequencing of mRNA from Whole Blood using Nanopore Sequencing

Published on: June 3, 2019

13.5K
Nanopore DNA Sequencing for Metagenomic Soil Analysis
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Nanopore DNA Sequencing for Metagenomic Soil Analysis

Published on: December 14, 2017

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Validating Whole Genome Nanopore Sequencing, using Usutu Virus as an Example
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Validating Whole Genome Nanopore Sequencing, using Usutu Virus as an Example

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科学领域:

  • 分子生物学分子生物学
  • 生物信息学是一种生物信息学.
  • 基因组学就是基因组学.

背景情况:

  • 等离子体的构造是生命科学研究的基础.
  • 序列验证是等离子体构造中的一个主要成本驱动因素.
  • 长读测序提供了全等离子体分析,但对于常规使用来说仍然很昂贵.

研究的目的:

  • 开发一种成本效益高的方法,用于常规的整体质粒测序.
  • 为了使多个等离子体的多重复合用于纳米孔测序.
  • 为了降低等离子体序列验证的成本.

主要方法:

  • 开发了SAVEMONEY (简单的算法非常高效的复合牛津纳米孔实验为您),一个计算方法.
  • 实施了测试前步骤,以设计最佳的等离子体混合物.
  • 使用后分析,包括序列分类,对齐和贝叶斯共识确定.

主要成果:

  • SAVEMONEY允许混合和计算去混合多种等离子体.
  • 只差两个基的等离子体可以进行多重复合.
  • 准确的共识测序在每180次阅读中保持了最多6个等离子体.

结论:

  • SAVEMONEY使用纳米孔技术实现了全质粒测序的民主化.
  • 该方法显著降低了整体质粒测序的有效成本.
  • 这种方法使得纳米孔测序更具竞争力与桑格测序用于等离子体验证.