重组和转换驱动基因组结构变异,可能影响宿主-通用主义真菌植物病原体的生命史特征
Mark C Derbyshire1, Toby E Newman2, Yuphin Khentry2
1Centre for Crop and Disease Management, Curtin University, Perth, WA, Australia. mark.derbyshire@curtin.edu.au.
BMC biology
|April 27, 2025
概括
结构变异 (SVs) 驱动植物病原体的进化. 转位子和再组合都对 SV 多样性有所贡献,显著影响病原体特征和宿主通用学家的适应性,如Sclerotinia sclerotiorum.
科学领域:
- 基因组学就是基因组学.
- 进化生物学 进化生物学
- 植物病理学 植物病理学
背景情况:
- 了解植物病原体进化对于可持续的作物疾病管理至关重要.
- 由结构变异 (SV) 驱动的表型变异性对于病原体的生存至关重要.
- 转子体和介质重组在SV获得中的作用仍然不清楚,特别是在宿主泛性病原体中.
研究的目的:
- 研究转子和重组对宿主泛性病原体Sclerotinia sclerotiorum结构变异多样性的贡献.
- 评估SVs对表型变异性和生命史特征的影响.
主要方法:
- 使用25个高质量的基因组构建图形泛基因组.
- 对190个S. sclerotiorum菌株的双硫酸盐测序和短读数据的分析.
- 开发一种新的统计数据来量化平均对对结构变化.
主要成果:
- S. sclerotiorum表现出真核半球变异的标志,包括重组热点和快速链接不平衡衰变.
- 转位子和重组独立地对结构变异多样性作出贡献.
- SVs显著影响了14个生命史特征,尽管只有5%的基因是不可用的.
结论:
- 转位子和重组是S. sclerotiorum中SV多样性的明显驱动因素.
- 结构变异在表型变异性中起着重要作用,增强宿主泛性病原体的适应性灵活性.
相关概念视频
Overview of Transposition and Recombination
15.0K
Transposons make up a significant part of genomes of various organisms. Therefore, it is believed that transposition played a major evolutionary role in speciation by changing genome sizes and modifying gene expression patterns. For example, in bacteria, transposition can lead to conferring antibiotic resistance. Movement of transposable elements within the genetic pool of pathogenic bacteria can aid in transfer of antibiotic-resistant genetic elements. In eukaryotes, transposons can carry out...
15.0K
Conservative Site-specific Recombination and Phase Variation
5.9K
Because the DNA segments are cut and reorganized in a direction-specific manner, site-specific recombination has emerged as an efficient genetic engineering technique. Flippase and Cyclization recombinases or Flp and Cre, respectively, are two members of the tyrosine recombinase family derived from bacteriophages, that are used to mediate site-specific DNA insertions, deletions, and targeted expression of proteins in mammalian cell lines.
The recognition sites for Cre recombinase called LoxP...
The recognition sites for Cre recombinase called LoxP...
5.9K
Viral Recombination
23.1K
Cells are sometimes infected by more than one virus at once. When two viruses disassemble to expose their genomes for replication in the same cell, similar regions of their genomes can pair together and exchange sequences in a process called recombination. Alternatively, viruses with segmented genomes can swap segments in a process called reassortment.
23.1K
Gene Conversion
9.6K
Other than maintaining genome stability via DNA repair, homologous recombination plays an important role in diversifying the genome. In fact, the recombination of sequences forms the molecular basis of genomic evolution. Random and non-random permutations of genomic sequences create a library of new amalgamated sequences. These newly formed genomes can determine the fitness and survival of cells. In bacteria, homologous and non-homologous types of recombination lead to the evolution of new...
9.6K
Mismatch Repair
4.6K
Organisms are capable of detecting and fixing nucleotide mismatches that occur during DNA replication. This sophisticated process requires identifying the new strand and replacing the erroneous bases with correct nucleotides. Mismatch repair is coordinated by many proteins in both prokaryotes and eukaryotes.
The Mutator Protein Family Plays a Key Role in DNA Mismatch Repair
The human genome has more than 3 billion base pairs of DNA per cell. Prior to cell division, that vast amount of genetic...
The Mutator Protein Family Plays a Key Role in DNA Mismatch Repair
The human genome has more than 3 billion base pairs of DNA per cell. Prior to cell division, that vast amount of genetic...
4.6K
Gene Flow
34.3K
Gene flow is the transfer of genes among populations, resulting from either the dispersal of gametes or from the migration of individuals.
34.3K


