Jove
Visualize
联系我们
JoVE
x logofacebook logolinkedin logoyoutube logo
关于 JoVE
概览领导团队博客JoVE 帮助中心
作者
出版流程编辑委员会范围与政策同行评审常见问题投稿
图书馆员
用户评价订阅访问资源图书馆顾问委员会常见问题
研究
JoVE JournalMethods CollectionsJoVE Encyclopedia of Experiments存档
教育
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab Manual教师资源中心教师网站
使用条款与条件
隐私政策
政策

相关概念视频

DNA as a Genetic Template02:05

DNA as a Genetic Template

21.3K
Two structural features of the DNA molecule provide a basis for the mechanisms of heredity: the four nucleotide bases and its double-stranded nature. The Watson-Crick model of double-helical DNA structure, proposed in 1952, drew heavily upon the X-ray crystallography work of researchers Rosalind Franklin and Maurice Wilkins. Watson, Crick, and Wilkins jointly received the Nobel Prize in Physiology or Medicine for their work in 1962. Franklin was, controversially, excluded from the prize for...
21.3K
Single-Strand DNA Binding Proteins01:03

Single-Strand DNA Binding Proteins

13.7K
For successful DNA replication, the unwinding of double-stranded DNA must be accompanied by stabilization and protection of the separated single strands of the DNA. This crucial task is performed by single-strand DNA-binding (SSB) proteins. They bind to the DNA in a sequence-independent manner, which means that the nitrogenous bases of the DNA need not be present in a specific order for binding of SSB proteins to it. The binding of SSB proteins straightens single-stranded DNA (ssDNA) and makes...
13.7K
DNA Topoisomerases02:02

DNA Topoisomerases

30.5K
Topoisomerases are enzymes that relax overwound DNA molecules during various cell processes, including DNA replication and transcription. These enzymes regulate positive and negative DNA supercoiling without changing the nucleotide sequence. DNA overwinding in a clockwise direction results in positively supercoiled DNA, whereas underwinding in a counterclockwise direction produces negatively supercoiled DNA.
Types and Mechanism of action
Topoisomerases are divided into two main types. ...
30.5K
DNA Helicases00:55

DNA Helicases

20.9K
DNA unwinding helicase enzymes are a type of motor protein. Motor proteins can translocate along filaments or polymers using energy generated from ATP hydrolysis. Helicases are involved in all the important cellular processes where DNA unwinding is required, such as DNA replication, repair, recombination, and transcription. They are present in all living organisms, but vary in their structure, function, and mechanism of action. For example, in prokaryotes, DnaB helicase binds and translocates...
20.9K
The Replisome03:01

The Replisome

32.5K
DNA replication is carried out by a large complex of proteins that act in a coordinated matter to achieve high-fidelity DNA replication. Together this complex is known as the DNA replication machinery or the replisome.
The synthesis of the leading and lagging strands is a highly coordinated process. To explain this, the “Trombone model” was proposed by Bruce Alberts in 1980. The DNA loop formation starts when a primer is synthesized on the parent lagging strand. The loop grows with...
32.5K
The DNA Replication Fork01:02

The DNA Replication Fork

35.2K
An organism’s genome needs to be duplicated in an efficient and error-free manner for its growth and survival. The replication fork is a Y-shaped active region where two strands of DNA are separated and replicated continuously. The coupling of DNA unzipping and complementary strand synthesis is a characteristic feature of a replication fork.   Organisms with small circular DNA, such as E. coli, often have a single origin of replication; therefore, they have only two replication...
35.2K

您也可能阅读

相关文章

通过共同作者、期刊和引用图与本文相关的文章。

排序
Same author

Using Deep Graph Neural Networks Improves Physics-Based Hydration Free Energy Predictions Even for Molecules Outside of the Training Set Distribution.

The journal of physical chemistry. B·2025
Same author

Quantifying conformational heterogeneity of 3D genome organization in fruit fly.

PloS one·2025
Same author

Quantifying Conformational Heterogeneity of 3D Genome Organization in Fruit Fly.

bioRxiv : the preprint server for biology·2025
Same author

Multi-plateau force-extension curves of long double-stranded DNA molecules.

bioRxiv : the preprint server for biology·2025
Same author

Optimal Dielectric Boundary for Binding Free Energy Estimates in the Implicit Solvent.

Journal of chemical information and modeling·2024
Same author

Implicit Solvent with Explicit Ions Generalized Born Model in Molecular Dynamics: Application to DNA.

Journal of chemical theory and computation·2024

相关实验视频

Updated: May 10, 2025

Stretching Short Sequences of DNA with Constant Force Axial Optical Tweezers
08:48

Stretching Short Sequences of DNA with Constant Force Axial Optical Tweezers

Published on: October 13, 2011

13.0K

长长的双链DNA分子的多平面力-延伸曲线.

Alexander Y Afanasyev1, Alexey V Onufriev2,3

  • 1Department of Biomedical Engineering and Mechanics, Virginia Polytechnic Institute and State University, Blacksburg, Virginia 24061, United States.

ACS omega
|April 28, 2025
PubMed
概括

拉伸的双链DNA可以显示多个高原在强力延伸曲线,这取决于分段属性. 这些独特的DNA状态可能会影响细胞处理速度.

更多相关视频

Studying DNA Looping by Single-Molecule FRET
11:27

Studying DNA Looping by Single-Molecule FRET

Published on: June 28, 2014

15.3K
Optical Tweezers to Study RNA-Protein Interactions in Translation Regulation
12:26

Optical Tweezers to Study RNA-Protein Interactions in Translation Regulation

Published on: February 12, 2022

4.8K

相关实验视频

Last Updated: May 10, 2025

Stretching Short Sequences of DNA with Constant Force Axial Optical Tweezers
08:48

Stretching Short Sequences of DNA with Constant Force Axial Optical Tweezers

Published on: October 13, 2011

13.0K
Studying DNA Looping by Single-Molecule FRET
11:27

Studying DNA Looping by Single-Molecule FRET

Published on: June 28, 2014

15.3K
Optical Tweezers to Study RNA-Protein Interactions in Translation Regulation
12:26

Optical Tweezers to Study RNA-Protein Interactions in Translation Regulation

Published on: February 12, 2022

4.8K

科学领域:

  • 生物物理学的生物物理.
  • 分子生物学分子生物学
  • 计算生物学 计算生物学

背景情况:

  • 双链DNA (dsDNA) 在拉伸时表现出独特的机械特性.
  • 强力延伸曲线中的平原区域表明了dsDNA的特定机械状态.

研究的目的:

  • 为了预测复合dsDNA片段的强力延伸行为,具有不同的片段属性.
  • 研究在拉伸的dSDNA中形成不同的高原区域和构造状态.

主要方法:

  • 使用一个珠子弹粗粒动态模型.
  • 采用非凸的潜力来模拟dDNA的拉伸.
  • 模拟的复合dsDNA片段,其片段具有不同的平原力值.

主要成果:

  • 预测了复合dsDNA的强度延伸曲线中的多个不同的平原区域.
  • 证明了具有不同高原力的细分会导致多个高原.
  • 观察到细分延伸的剧烈差异,其中一个细分占据了混合状态的延伸.
  • 发现细分顺序对整体力延伸曲线的影响最小.

结论:

  • 复合dsDNA片段可以在拉伸时表现出多个不同的机械状态.
  • 这些依赖序列的结构状态可能在细胞机械的DNA处理中发挥功能作用.