溶液AFM成像和粗粒度分子建模酵母凝固素结构变异与ATP水解周期相结合
Hiroki Koide1, Noriyuki Kodera2, Shoji Takada1
1Department of Biophysics, Graduate School of Science, Kyoto University, Kyoto, Japan.
Journal of molecular biology
|May 5, 2025
概括
在这种情况下,Condensin
科学领域:
- 分子生物学分子生物学
- 结构生物学 结构生物学
- 生物化学 生物化学
背景情况:
- 凝素通过ATP水解调节线粒分裂期间的染色质结构.
- 它的功能就像一个分子电机,挤出DNA循环.
- 与ATP水解相关的链区域的构造变化仍然不清楚.
研究的目的:
- 阐明凝聚素的链形状变化和ATP水解之间的合机制.
- 为了研究不同核酸结合状态的凝聚素的结构动力学.
主要方法:
- 溶液原子力显微镜 (AFM) 对酵母凝聚素全息复合物的成像.
- 在AMP-PNP,ATPγS和ADP的存在下进行AFM成像.
- 对Smc2/4异构体的分子动力学模拟.
主要成果:
- 对头部的ATP结合会诱导头部的合和链的打开.
- 在ADP释放之后,Brn1亚单元的N终端区域与Smc2头部的重新关联.
- 观察到不同的结构状态与不同的核酸条件相关.
结论:
- 凝素的链开口与ATP诱导的头部接触直接结合.
- 辅助子单元Brn1在调节ATP水解后的凝循环中发挥作用.
- 这些发现提供了对凝素在染色体分离中的作用的机制性见解.
更多相关视频
相关概念视频
Condensins
3.3K
Condensins are large protein complexes that use ATP to fuel the assembly of chromosomes during mitosis. They transform the tangled, shapeless mass of post-interphase DNA into individualized chromosomes by compacting, organizing, and segregating chromosomal DNA.
The plant and animal cells contain two types of condensin complexes—condensin I and condensin II. Both complexes have five subunits: two SMC (Structural Maintenance of Chromosomes) subunits, a kleisin subunit, and two HEAT-repeat...
The plant and animal cells contain two types of condensin complexes—condensin I and condensin II. Both complexes have five subunits: two SMC (Structural Maintenance of Chromosomes) subunits, a kleisin subunit, and two HEAT-repeat...
3.3K
Studying the Cytoskeleton
5.8K
The cytoskeletal architecture can be studied using different microscopic and biochemical techniques. Electron microscopy was instrumental in discovering the cytoskeletal architecture around the 1960s, which allowed obtaining structural information at a high-resolution level. However, the sample preparation procedure often limits this ability in biological samples. Several protocols have been developed over the years to optimize sample preparation. In one of the protocols known as rotary...
5.8K
Atomic Force Microscopy
3.3K
Atomic force microscopy (AFM) is a type of scanning probe microscopy that can analyze topographic details of various specimens like ceramics, glass, polymers, and biological samples. AFM offers over 1000 times more resolution than the optical imaging system. Images generated from AFM are three-dimensional surface profiles, offering an advantage over the flat, two-dimensional images from other imaging techniques.
The AFM Probe
The probe is regarded as the heart of any AFM setup and comprises the...
The AFM Probe
The probe is regarded as the heart of any AFM setup and comprises the...
3.3K
Actin Polymerization
6.2K
Actin polymerization occurs through the head-to-tail association of binding sites on monomeric actin or G-actin to form filamentous or F-actin. The polymerization can be divided into three phases ̶ nucleation, elongation, and steady-state phase.
The nucleation phase involves forming a stable nucleus consisting of three actin monomers to form a new actin filament. Actin-binding proteins such as formins and Arp2/3 complex help filament growth post-nucleation. The Formins form straight...
The nucleation phase involves forming a stable nucleus consisting of three actin monomers to form a new actin filament. Actin-binding proteins such as formins and Arp2/3 complex help filament growth post-nucleation. The Formins form straight...
6.2K


