作为3D-QSAR,3D-QSAR,对接和分子动力学模拟研究的R-选择性联体的2-Phenylcyclopropylmethylamine (PCPMA) 衍生物
Li Guo1, Yuepeng Gao1, Sujuan Zhang1
1Key Laboratory of Xinjiang Phytomedicine Resource and Utilization Ministry of Education, School of Pharmacy, Institute for Safflower Industry Research, Shihezi University, Shihezi 832002, China.
International journal of molecular sciences
|May 7, 2025
概括
研究人员使用3D-QSAR和分子动力学开发了新的多巴胺D3受体 (D3R) 配体. 这些2-cyclopropylmethylamine衍生物显示出有希望的选择性和对D3R的结合亲和力.
科学领域:
- 药用化学 医学化学
- 神经科学是一个神经科学.
- 计算化学计算化学
背景情况:
- 多巴胺D3受体 (D3R) 对运动和认知功能至关重要.
- 选择性调节D3R是各种神经疾病的治疗点.
研究的目的:
- 设计和研究具有对D3R的高选择性的新型2-phenylcyclopropylmethylamine (PCPMA) 衍生物.
- 阐明控制PCPMA与D3R.结合的结构-活动关系.
主要方法:
- 三维定量结构-活动关系 (3D-QSAR) 建模,包括CoMFA和CoMSIA.
- 分子对接和300 ns的分子动力学模拟.
- 免费能源计算和能量分解分析.
主要成果:
- 开发了具有高统计意义 (高r2和q2值) 的预测3D-QSAR模型 (CoMFA,CoMSIA).
- 确定了固态,静电和疏水相互作用作为PCPMA与D3R.结合的关键因素.
- 设计了四种新的PCPMA衍生品,预计会增强D3R亲和力.
- 分子动力学和模拟证实了设计配体和D3R结合口袋残留物之间强烈的相互作用.
结论:
- 这项研究为设计选择性D3R配体提供了理论框架.
- 这些发现指导了对新型PCPMA衍生物在D3R相关疾病的未来实验验证.
- 这项工作促进了对D3R联体-受体相互作用的理解.
相关概念视频
Nomenclature of Aryl and Heterocyclic Amines
2.3K
The simplest aromatic amine is phenylamine, which contains an –NH2 functionality directly attached to an aromatic ring. The name aniline is designated for this skeleton. As shown in Figure 1, the common names of the functionalized anilines involve prefixes ortho-, meta-, and para- to indicate the substitution position. Different functionalized aniline derivatives also have notable trivial names.
2.3K
Adrenergic Agonists: Chemistry and Structure-Activity Relationship
2.5K
Adrenergic agonists' structure-activity relationship (SAR) determines their selectivity and efficacy. These agonists comprise a phenylethylamine moiety with an aromatic ring and an ethylamine side chain.
Aromatic ring substitutions: Substituting the aromatic ring with –OH groups at positions 3 and 4 yields catecholamines (e.g., epinephrine), which have a high affinity for adrenoceptors. Hydrogen bonding between –OH groups and receptors enhances adrenergic activity.
Separation of...
Aromatic ring substitutions: Substituting the aromatic ring with –OH groups at positions 3 and 4 yields catecholamines (e.g., epinephrine), which have a high affinity for adrenoceptors. Hydrogen bonding between –OH groups and receptors enhances adrenergic activity.
Separation of...
2.5K
Preparation of 1° Amines: Hofmann and Curtius Rearrangement Overview
3.1K
In the presence of an aqueous base and a halogen, primary amides can lose the carbonyl (as carbon dioxide) and undergo rearrangement to form primary amines. This reaction, called the Hofmann rearrangement, can produce primary amines (aryl and alkyl) in high yields without contamination by secondary and tertiary amines.
3.1K
Basicity of Heterocyclic Aromatic Amines
5.3K
Heterocyclic amines, where the N atom is a part of an alicyclic system, are similar in basicity to alkylamines. Interestingly, the heterocyclic amine having a nitrogen atom as part of an aromatic ring has much less basicity than its corresponding alicyclic counterpart. For this reason, as presented in Figure 1, piperidine (pKb = 2.8) is significantly more basic than pyridine (pKb = 8.8).
5.3K
Amines to Amides: Acylation of Amines
2.3K
Various carboxylic acid derivatives (such as acid chlorides, esters, and anhydrides) can be used for the acylation of amines to yield amides. The reaction requires two equivalents of amines. The first amine molecule functions as a nucleophile and attacks the carbonyl carbon to produce a tetrahedral intermediate. This is followed by the loss of the leaving group and restoration of the C=O bond.
Next, the second equivalent of amine serves as a Brønsted base and deprotonates the quaternary...
Next, the second equivalent of amine serves as a Brønsted base and deprotonates the quaternary...
2.3K
Phase II Reactions: Methylation Reactions
81
Methylation is a phase II biotransformation process involving the attachment of a methyl group to a substrate. Enzymes known as methyltransferases orchestrate this reaction.
The mechanism of methylation unfolds in two stages. The first stage sees a methyltransferase enzyme facilitating the transfer of a methyl group from S-adenosylmethionine (SAM) to the substrate, forming S-adenosylhomocysteine (SAH). The second stage involves further metabolism of SAH into homocysteine, which can be recycled...
The mechanism of methylation unfolds in two stages. The first stage sees a methyltransferase enzyme facilitating the transfer of a methyl group from S-adenosylmethionine (SAM) to the substrate, forming S-adenosylhomocysteine (SAH). The second stage involves further metabolism of SAH into homocysteine, which can be recycled...
81


