最初的深度神经网络模拟显示,碳酸解离被少数cis-trans conformers主导
Yueqi Zhao1, Feifei Tian1, Zhaoru Sun1
1School of Physical Science and Technology, ShanghaiTech University, 201210 Shanghai, China.
碳酸 (H2CO3) 解离是生物pH调节的关键. 不是最丰富的cis-trans变压器,由于其独特的结构和电子特性,主导了质子捐赠,影响了质子转移通路.
科学领域:
- 生物化学 生物化学
- 物理化学 物理化学
- 计算化学计算化学
背景情况:
- 碳酸 (H2CO3) 是生物系统和海洋中至关重要的缓冲物.
- 了解H2CO3解离动态对于pH调节至关重要.
- 在研究解离方面,有三种符合性 (cis-cis,cis-trans,trans-trans) 存在挑战.
研究的目的:
- 为了探索溶液中H2CO3的解离动态.
- 为了研究不同适配体在质子捐献中的作用.
- 阐明影响质子转移通路的因素.
主要方法:
- 深潜分子动力学模拟.
- 一开始的准确性计算.
- 在水溶液中的纳秒时间尺度模拟.
主要成果:
- 尽管cis-cis (CC) 形态变体较为丰富,但cis-trans (CT) 形态变体是主要的质子捐赠体.
- CT调节器的增强deprotonation与结环结构和电子不对称性有关.
- 来自CT调整器的质子显示出对归向路径的更强烈偏好.
结论:
- 电图调节器的拓和电子特性极大地影响了水性H2CO3解离.
- 图形共振器的结构促进了多种不同的质子转移机制.
- 这项研究提供了对生物缓冲系统基本化学的洞察.
更多相关视频
05:57Author Spotlight: In Silico Creation and Impact of Carbonylated Amino Acids on Protein Structure and Function
Published on: April 26, 2024
09:17Structure-Based Simulation and Sampling of Transcription Factor Protein Movements along DNA from Atomic-Scale Stepping to Coarse-Grained Diffusion
Published on: March 1, 2022
相关概念视频
Conformations of Ethane and Propane
Staggered conformation is a low energy and more stable conformation with the C-H bonds on the front carbon placed at 60°dihedral angles relative to the C-H bonds on the back carbon, leading to a reduced torsional strain. In staggered...
Molecular Structure and Acidity
The size effect explains the change in atomic size on acidity. When comparing the acids formed from elements that belong to the same column in the periodic table, their atomic sizes...
Conformations of Cyclohexane
The chair form is the most stable and derives its name from its resemblance to the “easy chair.” In the chair conformation, two carbon atoms are arranged out-of-plane — one above and one below, minimizing the torsional strain. In the chair form, the bond angle is very close to the ideal...
Disubstituted Cyclohexanes: cis-trans Isomerism
In cyclohexane, the substituents can occupy different positions generating distinct isomers....
Conformations of Butane
¹H NMR of Conformationally Flexible Molecules: Temporal Resolution
