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Evolutionary Relationships through Genome Comparisons02:54

Evolutionary Relationships through Genome Comparisons

5.6K
Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
5.6K
Gene Evolution - Fast or Slow?02:05

Gene Evolution - Fast or Slow?

7.0K
The genomes of eukaryotes are punctuated by long stretches of sequence which do not code for proteins or RNAs. Although some of these regions do contain crucial regulatory sequences, the vast majority of this DNA serves no known function. Typically, these regions of the genome are the ones in which the fastest change, in evolutionary terms, is observed, because there is typically little to no selection pressure acting on these regions to preserve their sequences.
In contrast, regions which code...
7.0K
Phylogenetic Trees03:21

Phylogenetic Trees

44.8K
Phylogenetic trees come in many forms. It matters in which sequence the organisms are arranged from the bottom to the top of the tree, but the branches can rotate at their nodes without altering the information. The lines connecting individual nodes can be straight, angled, or even curved.
44.8K
Genetic Variation01:25

Genetic Variation

238
Genetic variation is the diversity in DNA sequences found among individuals of the same species. This diversity is crucial for a species' survival because it helps organisms adapt to environmental changes. Genetic variation begins with fertilization, where an egg and sperm cell merge. Each of these cells carries 23 chromosomes, up to 46 in the fertilized egg. Chromosomes are long DNA strands that contain genes, the basic units of heredity.
Genes exist in different versions called alleles,...
238
Gene Duplication and Divergence02:37

Gene Duplication and Divergence

6.0K
The seminal work of Ohno in 1970 popularized the idea of gene duplication and divergence. DNA sequence comparison studies reveal that a large portion of the genes in bacteria, archaebacteria, and eukaryotes was  generated by gene duplication and divergence, indicating its critical role in evolution.
The duplicated copies of the gene are called Paralogs. Paralogs with similar sequences and functions form a gene family. Across several species, a large number of gene families are...
6.0K
Types of Genetic Transfer Between Organisms02:18

Types of Genetic Transfer Between Organisms

26.8K
Genetic transfer occurs when genetic information is passed from one organism to another. It occurs via two mechanisms: vertical gene transfer and horizontal gene transfer. Vertical gene transfer occurs when genetic information is transferred from one generation to the next, which happens much more frequently than horizontal gene transfer. Both sexual and asexual reproduction are forms of vertical gene transfer, where one or more organisms pass some or all of their genome onto their progeny.
26.8K

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相关实验视频

Updated: May 12, 2025

Using Phylogenetic Analysis to Investigate Eukaryotic Gene Origin
08:57

Using Phylogenetic Analysis to Investigate Eukaryotic Gene Origin

Published on: August 14, 2018

15.7K

在基因树上生成异质数据.

Martí Cortada Garcia1, Adrià Diéguez Moscardó1, Marta Casanellas1,2

  • 1Department of Mathematics, Universitat Politècnica de Catalunya, Barcelona, Spain.

Journal of computational biology : a journal of computational molecular cell biology
|May 9, 2025
PubMed
概括
此摘要是机器生成的。

GenPhylo是一个新的Python模块,用于模拟核酸序列数据. 它使用一般的马尔科夫模型自然地结合了谱系异质性,克服了连续时间马尔科夫过程的局限性.

关键词:
支部长度 支部长度 支部长度核酸替代是核酸替代的方法之一.序列数据模拟的序列数据模拟

更多相关视频

Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations
08:03

Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations

Published on: December 7, 2021

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Creating and Applying a Reference to Facilitate the Discussion and Classification of Proteins in a Diverse Group
07:49

Creating and Applying a Reference to Facilitate the Discussion and Classification of Proteins in a Diverse Group

Published on: August 16, 2017

7.0K

相关实验视频

Last Updated: May 12, 2025

Using Phylogenetic Analysis to Investigate Eukaryotic Gene Origin
08:57

Using Phylogenetic Analysis to Investigate Eukaryotic Gene Origin

Published on: August 14, 2018

15.7K
Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations
08:03

Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations

Published on: December 7, 2021

2.0K
Creating and Applying a Reference to Facilitate the Discussion and Classification of Proteins in a Diverse Group
07:49

Creating and Applying a Reference to Facilitate the Discussion and Classification of Proteins in a Diverse Group

Published on: August 16, 2017

7.0K

科学领域:

  • 计算生物学 计算生物学
  • 人类遗传学 是一个学科.
  • 生物信息学是一种生物信息学.

背景情况:

  • 遗传学分析依赖于模拟序列进化.
  • 现有的方法经常使用连续时间的马尔科夫过程,限制异质性.
  • 模拟与谱系特定变化的序列数据是具有挑战性的.

研究的目的:

  • 介绍GenPhylo,一个用于模拟核酸序列数据的Python模块.
  • 在基因学模拟中克服连续时间马尔科夫过程的局限性.
  • 允许在序列数据生成中纳入跨谱系的异质性.

主要方法:

  • 基因菲洛直接使用一般的马尔科夫模型.
  • 该模块避免了连续时间马尔科夫过程的限制.
  • 提供了一个算法来生成具有预先定义的预期替换数量的过渡矩阵.

主要成果:

  • 基因Phylo成功模拟了沿着族系的核酸序列数据.
  • 仿真方法自然地包含了不同血统的异质性.
  • 开发的算法可为各种模拟软件生成过渡矩阵.

结论:

  • GenPhylo提供了一种灵活的方法来模拟家族遗传序列.
  • 该模块通过考虑血统异质性来增强模拟进化数据的现实性.
  • GenPhylo为计算生物学和遗传学研究提供了一种有价值的工具.