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相关概念视频

Cell Specific Gene Expression01:58

Cell Specific Gene Expression

13.3K
Multicellular organisms contain a variety of structurally and functionally distinct cell types, but the DNA in all the cells originated from the same parent cells. The differences in the cells can be attributed to the differential gene expression. Liver cells, whose functions include detoxification of blood, production of bile to metabolize fats, and synthesis of proteins essential for metabolism, must express a specific set of genes to perform their functions. Gene expression also varies with...
13.3K
Gene Evolution - Fast or Slow?02:05

Gene Evolution - Fast or Slow?

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The genomes of eukaryotes are punctuated by long stretches of sequence which do not code for proteins or RNAs. Although some of these regions do contain crucial regulatory sequences, the vast majority of this DNA serves no known function. Typically, these regions of the genome are the ones in which the fastest change, in evolutionary terms, is observed, because there is typically little to no selection pressure acting on these regions to preserve their sequences.
In contrast, regions which code...
7.0K
Evolutionary Relationships through Genome Comparisons02:54

Evolutionary Relationships through Genome Comparisons

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Genome comparison is one of the excellent ways to interpret the evolutionary relationships between organisms. The basic principle of genome comparison is that if two species share a common feature, it is likely encoded by the DNA sequence conserved between both species. The advent of genome sequencing technologies in the late 20th century enabled scientists to understand the concept of conservation of domains between species and helped them to deduce evolutionary relationships across diverse...
5.6K
Cis-regulatory Sequences02:02

Cis-regulatory Sequences

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Cis-regulatory sequences are short fragments of non-coding DNA that are present on the same chromosomes as the genes that they regulate. These fragments serve as binding sites for transcriptional regulators, proteins that are responsible for controlling gene transcription and differential gene expression across cell types in eukaryotes. Cis-regulatory sequences can be close to the gene of interest or thousands of bases away in the DNA sequence; however, those sequences that are further away are...
9.6K
Synteny and Evolution02:31

Synteny and Evolution

3.1K
John H. Renwick first coined the term “synteny” in 1971, which refers to the genes present on the same chromosomes, even if they are not genetically linked. The species with common ancestry tend to show conserved syntenic regions. Therefore, the concept of synteny is nowadays used to describe the evolutionary relationship between species.
Around 80 million years ago, the human and mice lineages diverged from the common ancestor. During the course of evolution, the ancestral...
3.1K
Cell Diversity01:13

Cell Diversity

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The concept of a cell started with microscopic observations of dead cork tissue by Robert Hooke in 1665. Hooke coined the term "cell" based on the resemblance of the small subdivisions in the cork to the rooms that monks inhabited, called cells. About ten years later, Antonie van Leeuwenhoek became the first person to observe the living and moving cells under a microscope. In the century that followed, the theory that cells represented the basic unit of life developed.
Multicellular...
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相关实验视频

Updated: May 12, 2025

A Combinatorial Single-cell Approach to Characterize the Molecular and Immunophenotypic Heterogeneity of Human Stem and Progenitor Populations
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A Combinatorial Single-cell Approach to Characterize the Molecular and Immunophenotypic Heterogeneity of Human Stem and Progenitor Populations

Published on: October 25, 2018

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在比较单细胞表达数据中揭示细胞类型特定的进化模式.

Tian Qin1, Hongjiu Zhang2, Zhengting Zou1

  • 1State Key Laboratory of Animal Biodiversity Conservation and Integrated Pest Management, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China; University of Chinese Academy of Sciences, Beijing 101408, China.

Journal of genetics and genomics = Yi chuan xue bao
|May 9, 2025
PubMed
概括
此摘要是机器生成的。

我们开发了EVaDe,这是一个新的框架,用于分析单细胞表达数据中的适应性进化. 它识别出显示与适应相关的显著表达变化的基因,特别是在人类神经发育和裸鼠免疫力方面.

关键词:
适应性进化是适应性的进化.细胞类型 细胞类型基因表达的基因表达方式裸露的摩尔鼠是什么意思现型演化过程中的表型演化.前额叶皮层前额叶皮层一个单细胞的转录组学

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Droplet Barcoding-Based Single Cell Transcriptomics of Adult Mammalian Tissues
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Droplet Barcoding-Based Single Cell Transcriptomics of Adult Mammalian Tissues

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Single-cell Gene Expression Using Multiplex RT-qPCR to Characterize Heterogeneity of Rare Lymphoid Populations
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Single-cell Gene Expression Using Multiplex RT-qPCR to Characterize Heterogeneity of Rare Lymphoid Populations

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相关实验视频

Last Updated: May 12, 2025

A Combinatorial Single-cell Approach to Characterize the Molecular and Immunophenotypic Heterogeneity of Human Stem and Progenitor Populations
09:34

A Combinatorial Single-cell Approach to Characterize the Molecular and Immunophenotypic Heterogeneity of Human Stem and Progenitor Populations

Published on: October 25, 2018

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Droplet Barcoding-Based Single Cell Transcriptomics of Adult Mammalian Tissues
10:12

Droplet Barcoding-Based Single Cell Transcriptomics of Adult Mammalian Tissues

Published on: January 10, 2019

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Single-cell Gene Expression Using Multiplex RT-qPCR to Characterize Heterogeneity of Rare Lymphoid Populations
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Single-cell Gene Expression Using Multiplex RT-qPCR to Characterize Heterogeneity of Rare Lymphoid Populations

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科学领域:

  • 进化生物学是进化的生物学.
  • 基因组学就是基因组学.
  • 计算生物学是一种计算生物学.

背景情况:

  • 编码序列演变分析的确立方法已经存在.
  • 评估表型数据中的适应性,如基因表达,需要新的方法.

研究的目的:

  • 提出一种新的分析框架,EVaDe (表达差异分解),用于比较单细胞表达数据.
  • 通过表型进化理论来识别经历了适应性进化的基因和细胞类型.

主要方法:

  • 将基因表达变异分解为组件.
  • 识别具有高分类间分歧和低细胞内类型噪声的基因.
  • 将EVaDe应用于灵长类前额叶皮和裸鼠与小鼠数据集.

主要成果:

  • 前额叶皮层中的人类特异性基因与神经发育有关,并表现出适应性模式.
  • 特定的神经元类型表现出更适应性的基因,这表明有针对性的进化.
  • 裸露的鼠表现出天生的免疫基因和细胞类型的适应性表达变化.
  • EVaDe框架有效地识别了单细胞表达数据中的适应性进化.

结论:

  • EVaDe框架为研究单细胞表达数据中的适应性进化提供了一个强大的方法.
  • 在人类神经发育和裸鼠免疫力中发现的适应性变化突出了特定的进化轨迹.