生物门户:一个开放的社区资源,用于共享,搜索和利用生物医学本体学
Jennifer Vendetti1, Nomi L Harris2, Michael V Dorf1
1Center for Biomedical Informatics Research, Stanford University, Palo Alto, CA 94304, United States.
Nucleic acids research
|May 13, 2025
概括
生物门户是生物医学本体学的综合资源,提供搜索,注释和管理这些关键知识结构的工具. 它促进了对1500多个本体论的访问,支持生物医学研究和数据集成.
科学领域:
- 生物医学信息学 生物医学信息学
- 知识表示 知识表示
- 数据管理数据管理
背景情况:
- 生物门户作为生物医学本体学的中心枢纽,对于组织和标准化生命科学知识至关重要.
- 该平台自2005年以来一直在发展,现在拥有1549个本体学的庞大集合,其中1182个可供公众使用.
研究的目的:
- 为BioPortal的功能和最近的改进提供最新的概述.
- 突出BioPortal在促进生物医学本体学的发现,利用和管理方面的作用.
主要方法:
- 生物门户平台提供了一个网页界面,用于浏览,搜索和使用本体学进行注释.
- 通过REST API提供程序访问,使其能够与外部应用程序集成.
- 最近的功能包括知识图,统一数据模型,人气评级和简化的本体学变更请求系统.
主要成果:
- 生物门户网站目前拥有1549个本体论,其中1182个可供公众访问.
- 新功能通过自动化的GitHub Pull Requests来增强互操作性,知识集成和用户贡献.
结论:
- 生物门户网站继续成为生物医学界不可或缺的资源,通过其广泛的本体库和高级功能支持各种用例.
- 该平台的持续发展,包括知识图集成和改进的贡献工作流程,进一步巩固了其在生物医学研究和数据科学中的重要性.
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